Zmat5 MGI Mouse Gene Detail - MGI:1914428 - zinc finger, matrin type 5

Symbol

Zmat5
Name

zinc finger, matrin type 5
Synonyms

2610510L01Rik, D11Bwg0572e, D11Bwg1548e

Feature Type

protein coding gene
IDs

MGI:1914428
NCBI Gene: 67178
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr11:4654678-4687669 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 2.96 cM, cytoband A1
Mapping Data

4 experiments

SNPs within 2kb

825 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914428	protein coding gene	Chr11:4654671-4687669 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017987	protein coding gene	Chr11:1681492-1719590 (+)
A/J	MGP_AJ_G0017960	protein coding gene	Chr11:1652376-1687755 (+)
AKR/J	MGP_AKRJ_G0017924	protein coding gene	Chr11:1723560-1764935 (+)
BALB/cJ	MGP_BALBcJ_G0017928	protein coding gene	Chr11:1629540-1663307 (+)
C3H/HeJ	MGP_C3HHeJ_G0017741	protein coding gene	Chr11:1618522-1654404 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018380	protein coding gene	Chr11:1750394-1788639 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016038	protein coding gene	Chr11:1546697-1581812 (+)
CAST/EiJ	MGP_CASTEiJ_G0017303	protein coding gene	Chr11:1590675-1628799 (+)
CBA/J	MGP_CBAJ_G0017716	protein coding gene	Chr11:2021942-2061315 (+)
DBA/2J	MGP_DBA2J_G0017826	protein coding gene	Chr11:1556768-1591408 (+)
FVB/NJ	MGP_FVBNJ_G0017818	protein coding gene	Chr11:1595424-1629004 (+)
LP/J	MGP_LPJ_G0017897	protein coding gene	Chr11:1772839-1812186 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017844	protein coding gene	Chr11:1690720-1729215 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018420	protein coding gene	Chr11:1731272-1766380 (+)
PWK/PhJ	MGP_PWKPhJ_G0017083	protein coding gene	Chr11:1565426-1599362 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016880	protein coding gene	Chr11:1701750-1737565 (+)
WSB/EiJ	MGP_WSBEiJ_G0017357	protein coding gene	Chr11:1606103-1643941 (+)

Human Ortholog

ZMAT5, zinc finger matrin-type 5

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ZMAT5, zinc finger matrin-type 5
Synonyms

SNRNP20, U11/U12-20K, ZC3H19
Links

HGNC:28046

NCBI Gene ID: 55954

neXtProt AC: NX_Q9UDW3

UniProt: Q9UDW3
Chr Location

22q12.2; chr22:29730956-29767011 (-) GRCh38

MGI Vertebrate Homology

Zmat5 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: ZMAT5
Gene Tree

Zmat5

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Phenotype Summary

4 phenotypes from 1 allele in 1 genetic background
10 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

90
Endonuclease-mediated

3
Gene trapped

84
Targeted

3
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

51 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

8
GO References

6

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

767
Tissues

40
cDNA Data

11
Literature Summary

4

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase zmat5

ZFIN zmat5

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All Sequences

48
RefSeq

8
UniProt

1
CCDS

CCDS24389.1

Ensembl

ENSMUSG00000009076 (Evidence)
NCBI Gene

67178

			Length	Strain/Species	Flank
genomic	ENSMUSG00000009076	Ensembl Gene Model \| MGI Sequence Detail	32992	C57BL/6J	± kb
transcript	ENSMUST00000009220	Ensembl \| MGI Sequence Detail	792	Not Applicable
polypeptide	ENSMUSP00000009220	Ensembl \| MGI Sequence Detail	170	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000017682 zinc finger matrin-type protein 5

(term hierarchy)
InterPro Domains

IPR013085 U1-C, C2H2-type zinc finger

IPR036236 Zinc finger C2H2 superfamily

IPR000571 Zinc finger, CCCH-type

IPR036855 Zinc finger, CCCH-type superfamily

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All nucleic 14

cDNA 11

Primer pair 3

Microarray probesets 5

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MGD-MRK-34059, MGD-MRK-35728, MGI:106366, MGI:107263

Summaries

All 45

Developmental Gene Expression 4

Gene Ontology 6

Phenotypes 10
Earliest

J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Zmat5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100131	Chr11:4654616-4654631 (+)	-54 bp
Tssr100132	Chr11:4654642-4654702 (+)	-6 bp
Tssr100133	Chr11:4679858-4679867 (+)	25,185 bp
Tssr100134	Chr11:4679870-4679888 (+)	25,201 bp
Tssr100135	Chr11:4679889-4679894 (+)	25,214 bp
Tssr100136	Chr11:4679898-4679907 (+)	25,225 bp
Tssr100137	Chr11:4686240-4686263 (+)	31,574 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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