Sgms1os1 MGI Mouse Gene Detail - MGI:1914438 - Sgms1 opposite strand transcript 1

Symbol

Sgms1os1
Name

Sgms1 opposite strand transcript 1
Synonyms

2700046G09Rik

Feature Type

lncRNA gene
IDs

MGI:1914438
NCBI Gene: 67188
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr19:32366616-32368584 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 27.10 cM, cytoband C3
Mapping Data

2 experiments

SNPs within 2kb

123 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914438	lncRNA gene	Chr19:32366591-32368705 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005825	lincRNA gene	Chr19:31023768-31025735 (+)
A/J	MGP_AJ_G0005816	lincRNA gene	Chr19:29475018-29476985 (+)
AKR/J	MGP_AKRJ_G0005792	lincRNA gene	Chr19:30502141-30504108 (+)
BALB/cJ	MGP_BALBcJ_G0005795	lincRNA gene	Chr19:29532573-29534540 (+)
C3H/HeJ	MGP_C3HHeJ_G0005743	lincRNA gene	Chr19:30496518-30498485 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005955	lincRNA gene	Chr19:31877963-31879931 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005296	lincRNA gene	Chr19:29383238-29385211 (+)
CAST/EiJ	MGP_CASTEiJ_G0005681	lincRNA gene	Chr19:30403121-30405088 (+)
CBA/J	MGP_CBAJ_G0005728	lincRNA gene	Chr19:33360983-33362950 (+)
DBA/2J	MGP_DBA2J_G0005748	lincRNA gene	Chr19:29399567-29401534 (+)
FVB/NJ	MGP_FVBNJ_G0005775	lincRNA gene	Chr19:29225775-29227742 (+)
LP/J	MGP_LPJ_G0005829	lincRNA gene	Chr19:31028531-31030498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005761	lincRNA gene	Chr19:33236256-33238223 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005953	lincRNA gene	Chr19:30553340-30555308 (+)
PWK/PhJ	MGP_PWKPhJ_G0005628	lincRNA gene	Chr19:29097318-29099283 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005542	lincRNA gene	Chr19:29886896-29888862 (+)
WSB/EiJ	MGP_WSBEiJ_G0005735	lincRNA gene	Chr19:30590023-30591990 (+)

Human Ortholog

SGMS1-AS1, SGMS1 antisense RNA 1

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SGMS1-AS1, SGMS1 antisense RNA 1
Links

HGNC:49683

NCBI Gene ID: 104355295
Chr Location

10q11.23; chr10:50623466-50641451 (+) GRCh38

MGI Vertebrate Homology

Sgms1os1 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: SGMS1-AS1
Gene Tree

Sgms1os1

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

2
Gene trapped

2
Find Mice (IMSR)

0 strains or lines available

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All GO Annotations

4
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

13

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

31
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000097787 (Evidence)
NCBI Gene

67188

			Length	Strain/Species	Flank
genomic	67188	NCBI Gene Model \| MGI Sequence Detail	1969	C57BL/6J	± kb
transcript	NR_033198	RefSeq \| MGI Sequence Detail	1641	C57BL/6
polypeptide	Q8CBN0	UniProt \| EBI \| MGI Sequence Detail	140	Not Applicable

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UniProt

2 Sequences

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All nucleic 13

cDNA 13

Microarray probesets 1

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MGI:7398552

Summaries

All 17

Gene Ontology 1

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:201967 Lin ST, et al., MicroRNA-23a promotes myelination in the central nervous system. Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17468-73

TSS for Sgms1os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155955	Chr19:32364955-32364962 (+)	-1,657 bp
Tssr155956	Chr19:32364974-32364985 (+)	-1,636 bp
Tssr155957	Chr19:32365918-32365930 (+)	-692 bp
Tssr155958	Chr19:32366602-32366657 (+)	14 bp
Tssr5482	Chr19:32366825-32366864 (+)	229 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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