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Rpf2 Gene Detail
Summary
  • Symbol
    Rpf2
  • Name
    ribosome production factor 2 homolog
  • Synonyms
    2810470K21Rik, Bxdc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914489
    NCBI Gene: 67239
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:40099242-40123032 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 21.76 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    697 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914489
 protein coding gene Chr10:40099242-40123035 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017160
 protein coding gene Chr10:38769318-38793855 (-)
A/J MGP_AJ_G0017137
 protein coding gene Chr10:37729275-37753491 (-)
AKR/J MGP_AKRJ_G0017097
 protein coding gene Chr10:38259497-38284817 (-)
BALB/cJ MGP_BALBcJ_G0017100
 protein coding gene Chr10:37798909-37822107 (-)
C3H/HeJ MGP_C3HHeJ_G0016920
 protein coding gene Chr10:38591293-38614559 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017558
 protein coding gene Chr10:39976860-40001929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015254
 protein coding gene Chr10:35701012-35722685 (-)
CAST/EiJ MGP_CASTEiJ_G0016499
 protein coding gene Chr10:38773661-38795171 (-)
CBA/J MGP_CBAJ_G0016894
 protein coding gene Chr10:41810944-41836080 (-)
DBA/2J MGP_DBA2J_G0016999
 protein coding gene Chr10:37248349-37271930 (-)
FVB/NJ MGP_FVBNJ_G0016994
 protein coding gene Chr10:36744980-36769647 (-)
LP/J MGP_LPJ_G0017076
 protein coding gene Chr10:38749425-38774434 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017024
 protein coding gene Chr10:42648877-42673886 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017595
 protein coding gene Chr10:38247676-38270851 (-)
PWK/PhJ MGP_PWKPhJ_G0016279
 protein coding gene Chr10:37119768-37140292 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016063
 protein coding gene Chr10:38077625-38102677 (-)
WSB/EiJ MGP_WSBEiJ_G0016562
 protein coding gene Chr10:38543314-38571334 (-)



Homology
more
  • Human Ortholog
    RPF2, ribosome production factor 2 homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPF2, ribosome production factor 2 homolog
  • Synonyms
    bA397G5.4, BXDC1
  • Links
    NCBI Gene ID: 84154
    neXtProt AC: NX_Q9H7B2
    UniProt: Q9H7B2

  • Chr Location
    6q21; chr6:110982015-111028263 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    52
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038510 Ensembl Gene Model | MGI Sequence Detail 23791 C57BL/6J ±  kb
transcript ENSMUST00000183309 Ensembl | MGI Sequence Detail 1296 Not Applicable  
polypeptide ENSMUSP00000138581 Ensembl | MGI Sequence Detail 306 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 52
    cDNA 52

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143752, MGI:2143763
References
more
  • Summaries
    All 40
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory