2900005J15Rik Gene Detail

Summary

• Symbol
  2900005J15Rik
• Name
  RIKEN cDNA 2900005J15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914511
  NCBI Gene: 67261
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:25305973-25308005 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 12.22 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914511	lncRNA gene	Chr5:25305929-25315107 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015591	unclassified non-coding RNA gene	Chr5:22885237-22894364 (+)
A/J	MGP_AJ_G0015567	unclassified non-coding RNA gene	Chr5:22087043-22097786 (+)
AKR/J	MGP_AKRJ_G0015531	unclassified non-coding RNA gene	Chr5:22978776-22994951 (+)
BALB/cJ	MGP_BALBcJ_G0015529	unclassified non-coding RNA gene	Chr5:22594389-22603512 (+)
C3H/HeJ	MGP_C3HHeJ_G0015351	unclassified non-coding RNA gene	Chr5:23081301-23091396 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015983	unclassified non-coding RNA gene	Chr5:24392915-24401972 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013718	unclassified non-coding RNA gene	Chr5:20010035-20018961 (+)
CAST/EiJ	MGP_CASTEiJ_G0014907	unclassified non-coding RNA gene	Chr5:22284421-22295045 (+)
CBA/J	MGP_CBAJ_G0015332	unclassified non-coding RNA gene	Chr5:24824574-24836426 (+)
DBA/2J	MGP_DBA2J_G0015426	unclassified non-coding RNA gene	Chr5:22365985-22375143 (+)
FVB/NJ	MGP_FVBNJ_G0015433	unclassified non-coding RNA gene	Chr5:21742926-21752295 (+)
LP/J	MGP_LPJ_G0015507	unclassified non-coding RNA gene	Chr5:23289144-23298355 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015456	unclassified non-coding RNA gene	Chr5:25888236-25897342 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016025	unclassified non-coding RNA gene	Chr5:22612571-22621648 (+)
PWK/PhJ	MGP_PWKPhJ_G0014692	unclassified non-coding RNA gene	Chr5:21471634-21480786 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014480	unclassified non-coding RNA gene	Chr5:21960269-21976028 (+)
WSB/EiJ	MGP_WSBEiJ_G0015011	unclassified non-coding RNA gene	Chr5:22694935-22704016 (+)

Homology

• Gene Tree
  2900005J15Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving 2900005J15Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000043833 (Evidence)
• NCBI Gene
  67261

Representative Sequences			Length	Strain/Species
genomic	67261	NCBI Gene Model | MGI Sequence Detail	2033	C57BL/6J
transcript	NR_027851	RefSeq | MGI Sequence Detail	2033	C57BL/6
polypeptide	Q9D5C5	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 25

  Diseases 1

  Phenotypes 11
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2900005J15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45454	Chr5:25305698-25305757 (+)	-245 bp
Tssr45455	Chr5:25305921-25305986 (+)	-19 bp