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2900089D17Rik Gene Detail
Summary
  • Symbol
    2900089D17Rik
  • Name
    RIKEN cDNA 2900089D17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914527
    NCBI Gene: 67277
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:144178591-144193054 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 83.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    522 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914527
 lncRNA gene Chr5:144178500-144193054 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004218
 antisense lncRNA gene Chr5:149573127-149587174 (-)
A/J MGP_AJ_G0004196
 antisense lncRNA gene Chr5:143152964-143167342 (-)
AKR/J MGP_AKRJ_G0004177
 antisense lncRNA gene Chr5:147613561-147627845 (-)
BALB/cJ MGP_BALBcJ_G0004183
 antisense lncRNA gene Chr5:144420187-144434674 (-)
C3H/HeJ MGP_C3HHeJ_G0004131
 antisense lncRNA gene Chr5:148455379-148469828 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004332
 antisense lncRNA gene Chr5:155044733-155060821 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0004093
 antisense lncRNA gene Chr5:147981992-148000308 (-)
CBA/J MGP_CBAJ_G0004125
 antisense lncRNA gene Chr5:161413306-161428498 (-)
DBA/2J MGP_DBA2J_G0004141
 antisense lncRNA gene Chr5:142900489-142915225 (-)
FVB/NJ MGP_FVBNJ_G0004157
 antisense lncRNA gene Chr5:142123251-142138297 (-)
LP/J MGP_LPJ_G0004219
 antisense lncRNA gene Chr5:150179105-150193395 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004147
 antisense lncRNA gene Chr5:163776967-163791500 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004329
 antisense lncRNA gene Chr5:147510471-147526461 (-)
PWK/PhJ MGP_PWKPhJ_G0004046
 antisense lncRNA gene Chr5:142015636-142030197 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003990
 antisense lncRNA gene Chr5:145247347-145262179 (-)
WSB/EiJ MGP_WSBEiJ_G0004129
 antisense lncRNA gene Chr5:148305663-148320129 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    5
Representative SequencesLengthStrain/SpeciesFlank
genomic 67277 NCBI Gene Model | MGI Sequence Detail 14464 C57BL/6J ±  kb
transcript NR_190063 RefSeq | MGI Sequence Detail 690 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 8
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory