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1700047M11Rik Gene Detail
Summary
  • Symbol
    1700047M11Rik
  • Name
    RIKEN cDNA 1700047M11 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914580
    NCBI Gene: 67330
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:182128399-182130854 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 84.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    178 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914580
 lncRNA gene Chr1:182115506-182130890 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005056
 lincRNA gene Chr1:188910771-188926754 (+)
A/J MGP_AJ_G0005038
 lincRNA gene Chr1:181207496-181223108 (+)
AKR/J MGP_AKRJ_G0005016
 lincRNA gene Chr1:186584027-186599358 (+)
BALB/cJ MGP_BALBcJ_G0005020
 lincRNA gene Chr1:181842867-181858513 (+)
C3H/HeJ MGP_C3HHeJ_G0004968
 lincRNA gene Chr1:187394862-187410205 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005169
 lincRNA gene Chr1:195011036-195031526 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004577
 lincRNA gene Chr1:172135236-172151123 (+)
CAST/EiJ MGP_CASTEiJ_G0004915
 lincRNA gene Chr1:186736743-186756415 (+)
CBA/J MGP_CBAJ_G0004959
 lincRNA gene Chr1:202227803-202246720 (+)
DBA/2J MGP_DBA2J_G0004978
 lincRNA gene Chr1:179987430-180003159 (+)
FVB/NJ MGP_FVBNJ_G0004999
 lincRNA gene Chr1:178111638-178128279 (+)
LP/J MGP_LPJ_G0005056
 lincRNA gene Chr1:190096835-190112168 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0005175
 lincRNA gene Chr1:186403869-186419982 (+)
PWK/PhJ MGP_PWKPhJ_G0004867
 lincRNA gene Chr1:179171044-179187051 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004792
 lincRNA gene Chr1:185357229-185374728 (+)
WSB/EiJ MGP_WSBEiJ_G0004962
 lincRNA gene Chr1:186595964-186611754 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 67330 NCBI Gene Model | MGI Sequence Detail 2456 C57BL/6J ±  kb
transcript NR_015458 RefSeq | MGI Sequence Detail 686 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 12
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory