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H2ap Gene Detail
Summary
  • Symbol
    H2ap
  • Name
    H2A.P histone
  • Synonyms
    1700054O13Rik, H2AL3, Hypm
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914584
    NCBI Gene: 67334
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:9713186-9713739 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 4.61 cM, cytoband A1.2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914584
 protein coding gene ChrX:9713167-9713747 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035558
 protein coding gene ChrX:4579019-4579599 (+)
A/J MGP_AJ_G0035535
 protein coding gene ChrX:4701285-4701865 (+)
AKR/J MGP_AKRJ_G0035467
 protein coding gene ChrX:4742177-4742757 (+)
BALB/cJ MGP_BALBcJ_G0035528
 protein coding gene ChrX:4613756-4614336 (+)
C3H/HeJ MGP_C3HHeJ_G0035245
 protein coding gene ChrX:4710287-4710867 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036058
 protein coding gene ChrX:4659828-4660408 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032927
 protein coding gene ChrX:3819263-3819843 (+)
CAST/EiJ MGP_CASTEiJ_G0034537
 protein coding gene ChrX:4409436-4410016 (+)
CBA/J MGP_CBAJ_G0035214
 protein coding gene ChrX:5035915-5036495 (+)
DBA/2J MGP_DBA2J_G0035367
 protein coding gene ChrX:4607238-4607818 (+)
FVB/NJ MGP_FVBNJ_G0035314
 protein coding gene ChrX:4435657-4436237 (+)
LP/J MGP_LPJ_G0035449
 protein coding gene ChrX:4773782-4774362 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035357
 protein coding gene ChrX:4906005-4906585 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036070
 protein coding gene ChrX:4518521-4519101 (+)
PWK/PhJ MGP_PWKPhJ_G0034238
 protein coding gene ChrX:4119676-4120256 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034079
 protein coding gene ChrX:4592932-4593512 (+)
WSB/EiJ MGP_WSBEiJ_G0034673
 protein coding gene ChrX:4596044-4596624 (+)



Homology
more
  • Human Ortholog
    H2AP, H2A.P histone
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2AP, H2A.P histone
  • Synonyms
    CXorf27, HIP17, HYPM
  • Links
    NCBI Gene ID: 25763
    neXtProt AC: NX_O75409
    UniProt: O75409

  • Chr Location
    Xp11.4; chrX:37990779-37991314 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67334 NCBI Gene Model | MGI Sequence Detail 554 C57BL/6J ±  kb
transcript NM_026096 RefSeq | MGI Sequence Detail 554 C57BL/6  
polypeptide Q9CR04 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 4
Other
Accession IDs
less
MGI:6330721
References
more
  • Summaries
    All 23
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory