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Cstf1 Gene Detail
Summary
  • Symbol
    Cstf1
  • Name
    cleavage stimulation factor, 3' pre-RNA, subunit 1
  • Synonyms
    1700057K18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914587
    NCBI Gene: 67337
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:172212601-172224368 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 94.84 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    452 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914587
 protein coding gene Chr2:172212591-172224369 (+)
129S1/SvImJ ENSMUSG00200039980
 protein coding gene Chr2:169137199-169148945 (+)
A/J ENSMUSG00195023984
 protein coding gene Chr2:169465496-169477243 (+)
AKR/J ENSMUSG00220032555
 protein coding gene Chr2:168761251-168772997 (+)
BALB/cJ ENSMUSG00180033784
 protein coding gene Chr2:168911209-168922976 (+)
C3H/HeJ ENSMUSG00175038213
 protein coding gene Chr2:169680956-169692724 (+)
C57BL/6NJ ENSMUSG00215017826
 protein coding gene Chr2:169103303-169115069 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024736
 protein coding gene Chr2:164314870-164326264 (+)
CAST/EiJ ENSTCUG00005008323
 protein coding gene Chr2:168005663-168017440 (+)
CBA/J ENSMUSG00210038444
 protein coding gene Chr2:169591236-169603004 (+)
DBA/2J ENSMUSG00185025805
 protein coding gene Chr2:169304796-169316563 (+)
FVB/NJ ENSMUSG00205016551
 protein coding gene Chr2:168354086-168365831 (+)
JF1/MsJ ENSUMUG00000019798
 protein coding gene Chr2:168991244-169003024 (+)
LP/J ENSMUSG00230010113
 protein coding gene Chr2:170873669-170885415 (+)
NOD/ShiLtJ ENSMUSG00190039607
 protein coding gene Chr2:168991492-169003259 (+)
NZO/HlLtJ ENSMUSG00225001833
 protein coding gene Chr2:178867175-178878942 (+)
PWK/PhJ ENSLUMG00010032724
 protein coding gene Chr2:168879747-168891506 (+)
SPRET/EiJ ENSMSPG00010024471
 protein coding gene Chr2:171637513-171647451 (+)
WSB/EiJ ENSIUOG00005022404
 protein coding gene Chr2:168733775-168745546 (+)



Homology
more
  • Human Ortholog
    CSTF1, cleavage stimulation factor subunit 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSTF1, cleavage stimulation factor subunit 1
  • Synonyms
    CstF-50, CstFp50
  • Links
    NCBI Gene ID: 1477
    UniProt: Q05048

  • Chr Location
    20q13.2-q13.31; chr20:56392371-56406362 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    600
  • Tissues
    3
  • cDNA Data
    76
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027498 Ensembl Gene Model | MGI Sequence Detail 11768 C57BL/6J ±  kb
transcript ENSMUST00000116375 Ensembl | MGI Sequence Detail 3451 Not Applicable  
polypeptide ENSMUSP00000112076 Ensembl | MGI Sequence Detail 431 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000005975 cleavage stimulation factor subunit 1
    (term hierarchy)
  • InterPro Domains
    IPR032028 Cleavage stimulation factor subunit 1, dimerisation domain
    IPR044633 Cleavage stimulation factor subunit 1-like
    IPR038184 CSTF1, dimerization domain superfamily
    IPR001680 WD40 repeat
    IPR019775 WD40 repeat, conserved site
    IPR036322 WD40-repeat-containing domain superfamily
    IPR015943 WD40/YVTN repeat-like-containing domain superfamily
  • GlyGen
    Q99LC2 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 77
    cDNA 76
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2139050
References
more
  • Summaries
    All 42
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory