1700095B10Rik Gene Detail

Summary

• Symbol
  1700095B10Rik
• Name
  RIKEN cDNA 1700095B10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914610
  NCBI Gene: 67360
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:112941158-112949567 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  425 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914610	lncRNA gene	Chr5:112941158-112949567 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004143	antisense lncRNA gene	Chr5:115408423-115416831 (+)
A/J	MGP_AJ_G0004122	antisense lncRNA gene	Chr5:110910274-110918640 (+)
AKR/J	MGP_AKRJ_G0004103	antisense lncRNA gene	Chr5:114423510-114431916 (+)
BALB/cJ	MGP_BALBcJ_G0004109	antisense lncRNA gene	Chr5:112270020-112278428 (+)
C3H/HeJ	MGP_C3HHeJ_G0004057	antisense lncRNA gene	Chr5:114863070-114871517 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004257	antisense lncRNA gene	Chr5:119897585-119905994 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003734	antisense lncRNA gene	Chr5:105730898-105739368 (+)
CAST/EiJ	MGP_CASTEiJ_G0004019	antisense lncRNA gene	Chr5:113786136-113788757 (+)
CBA/J	MGP_CBAJ_G0004051	antisense lncRNA gene	Chr5:124403489-124411892 (+)
DBA/2J	MGP_DBA2J_G0004066	antisense lncRNA gene	Chr5:110973760-110982171 (+)
FVB/NJ	MGP_FVBNJ_G0004083	antisense lncRNA gene	Chr5:109708868-109717276 (+)
LP/J	MGP_LPJ_G0004144	antisense lncRNA gene	Chr5:115966240-115974648 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004072	antisense lncRNA gene	Chr5:128972971-128981377 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004254	antisense lncRNA gene	Chr5:113858072-113866480 (+)
PWK/PhJ	MGP_PWKPhJ_G0003972	antisense lncRNA gene	Chr5:109591719-109600176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003916	antisense lncRNA gene	Chr5:111352856-111361177 (+)
WSB/EiJ	MGP_WSBEiJ_G0004055	antisense lncRNA gene	Chr5:114384509-114392920 (+)

Homology

• Gene Tree
  1700095B10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700095B10Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000098230 (Evidence)
• NCBI Gene
  67360

Representative Sequences			Length	Strain/Species
genomic	67360	NCBI Gene Model | MGI Sequence Detail	8410	C57BL/6J
transcript	NR_040675	RefSeq | MGI Sequence Detail	1047	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700095B10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48004	Chr5:112941122-112941131 (+)	-31 bp
Tssr48005	Chr5:112941143-112941163 (+)	-5 bp
Tssr48006	Chr5:112941197-112941204 (+)	43 bp