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Mtcl3 Gene Detail
Summary
  • Symbol
    Mtcl3
  • Name
    MTCL family member 3
  • Synonyms
    6330407J23Rik, Soga3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914662
    NCBI Gene: 67412
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:29019992-29075626 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 16.52 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1755 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914662
 protein coding gene Chr10:29019835-29075626 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017110
 protein coding gene Chr10:27316995-27373012 (+)
A/J MGP_AJ_G0017087
 protein coding gene Chr10:26483121-26540818 (+)
AKR/J MGP_AKRJ_G0017047
 protein coding gene Chr10:26914647-26971629 (+)
BALB/cJ MGP_BALBcJ_G0017050
 protein coding gene Chr10:26599775-26655443 (+)
C3H/HeJ MGP_C3HHeJ_G0016870
 protein coding gene Chr10:27150684-27206296 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017508
 protein coding gene Chr10:28139515-28199693 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015206
 protein coding gene Chr10:25032676-25087712 (+)
CAST/EiJ MGP_CASTEiJ_G0016449
 protein coding gene Chr10:27219281-27284346 (+)
CBA/J MGP_CBAJ_G0016844
 protein coding gene Chr10:29482822-29548686 (+)
DBA/2J MGP_DBA2J_G0016949
 protein coding gene Chr10:26196580-26257208 (+)
FVB/NJ MGP_FVBNJ_G0016944
 protein coding gene Chr10:25819598-25872191 (+)
LP/J MGP_LPJ_G0017026
 protein coding gene Chr10:27289469-27346275 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016974
 protein coding gene Chr10:29604702-29666977 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017544
 protein coding gene Chr10:26816295-26869432 (+)
PWK/PhJ MGP_PWKPhJ_G0016231
 protein coding gene Chr10:25962372-26027219 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016015
 protein coding gene Chr10:26743120-26804757 (+)
WSB/EiJ MGP_WSBEiJ_G0016512
 protein coding gene Chr10:26952767-27013839 (+)



Homology
more
  • Human Ortholog
    MTCL3, MTCL family member 3
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MTCL3, MTCL family member 3
  • Synonyms
    C6orf174, dJ403A15.3, SOGA3
  • Links
    NCBI Gene ID: 387104
    neXtProt AC: NX_Q5TF21
    UniProt: Q5TF21

  • Chr Location
    6q22.33; chr6:127472806-127519335 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    822
  • Tissues
    111
  • cDNA Data
    27
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67412 NCBI Gene Model | MGI Sequence Detail 55635 C57BL/6J ±  kb
transcript NM_026138 RefSeq | MGI Sequence Detail 3948 C57BL/6  
polypeptide Q6NZL0 UniProt | EBI | MGI Sequence Detail 945 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 31
    cDNA 28
    Primer pair 1
    Other 2

    Microarray probesets 7
Other
Accession IDs
less
MGI:7525414
References
more
  • Summaries
    All 32
    Developmental Gene Expression 5
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory