4930518J20Rik Gene Detail

Summary

• Symbol
  4930518J20Rik
• Name
  RIKEN cDNA 4930518J20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914839
  NCBI Gene: 67589
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:156131059-156132536 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914839	lncRNA gene	Chr1:156131059-156132536 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002767	antisense lncRNA gene	Chr1:161246282-161247768 (+)
A/J	MGP_AJ_G0002743	antisense lncRNA gene	Chr1:154768529-154770022 (+)
AKR/J	MGP_AKRJ_G0002724	antisense lncRNA gene	Chr1:159499715-159501208 (+)
BALB/cJ	MGP_BALBcJ_G0002730	antisense lncRNA gene	Chr1:155266926-155268419 (+)
C3H/HeJ	MGP_C3HHeJ_G0002688	antisense lncRNA gene	Chr1:159626855-159628348 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002873	antisense lncRNA gene	Chr1:166760884-166762361 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002420	antisense lncRNA gene	Chr1:146967430-146968899 (+)
CAST/EiJ	MGP_CASTEiJ_G0002661	antisense lncRNA gene	Chr1:159170487-159171986 (+)
CBA/J	MGP_CBAJ_G0002684	antisense lncRNA gene	Chr1:172635823-172637218 (+)
DBA/2J	MGP_DBA2J_G0002690	antisense lncRNA gene	Chr1:153725921-153727414 (+)
FVB/NJ	MGP_FVBNJ_G0002710	antisense lncRNA gene	Chr1:152179860-152181353 (+)
LP/J	MGP_LPJ_G0002768	antisense lncRNA gene	Chr1:162365404-162366886 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002700	antisense lncRNA gene	Chr1:180213021-180214514 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002877	antisense lncRNA gene	Chr1:159296863-159298242 (+)
PWK/PhJ	MGP_PWKPhJ_G0002618	antisense lncRNA gene	Chr1:152802619-152804112 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002569	antisense lncRNA gene	Chr1:158050675-158052144 (+)
WSB/EiJ	MGP_WSBEiJ_G0002690	antisense lncRNA gene	Chr1:159395532-159397009 (+)

Homology

• Gene Tree
  4930518J20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 4930518J20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000103705 (Evidence)
• NCBI Gene
  67589

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103705	Ensembl Gene Model | MGI Sequence Detail	1478	C57BL/6J
transcript	ENSMUST00000195064	Ensembl | MGI Sequence Detail	1478	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:2138523

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930518J20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9559	Chr1:156131035-156131040 (+)	-21 bp
Tssr9560	Chr1:156131043-156131071 (+)	-2 bp
Tssr9561	Chr1:156131073-156131080 (+)	18 bp