Sp3os MGI Mouse Gene Detail - MGI:1914936 - trans-acting transcription factor 3, opposite strand

Sequence Map

Chr2:72809776-72819593 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914936	antisense lncRNA gene	Chr2:72809768-72819596 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003585	antisense lncRNA gene	Chr2:73215677-73227020 (+)
A/J	MGP_AJ_G0003567	antisense lncRNA gene	Chr2:70341474-70350737 (+)
AKR/J	MGP_AKRJ_G0003545	antisense lncRNA gene	Chr2:72276989-72286171 (+)
BALB/cJ	MGP_BALBcJ_G0003556	antisense lncRNA gene	Chr2:70540304-70550394 (+)
C3H/HeJ	MGP_C3HHeJ_G0003503	antisense lncRNA gene	Chr2:72466701-72476375 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003694	antisense lncRNA gene	Chr2:75403764-75416251 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003203	antisense lncRNA gene	Chr2:67553794-67562921 (+)
CAST/EiJ	MGP_CASTEiJ_G0003466	antisense lncRNA gene	Chr2:72716215-72725461 (+)
CBA/J	MGP_CBAJ_G0003500	antisense lncRNA gene	Chr2:78163728-78175475 (+)
DBA/2J	MGP_DBA2J_G0003508	antisense lncRNA gene	Chr2:69948168-69957263 (+)
FVB/NJ	MGP_FVBNJ_G0003528	antisense lncRNA gene	Chr2:69372326-69375113 (+)
LP/J	MGP_LPJ_G0003581	antisense lncRNA gene	Chr2:73095937-73105897 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003516	antisense lncRNA gene	Chr2:80098425-80108480 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003696	antisense lncRNA gene	Chr2:72353158-72363148 (+)
PWK/PhJ	MGP_PWKPhJ_G0003421	antisense lncRNA gene	Chr2:69855859-69865593 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003365	antisense lncRNA gene	Chr2:72592659-72601915 (+)
WSB/EiJ	MGP_WSBEiJ_G0003501	antisense lncRNA gene	Chr2:72820937-72822307 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	100503849	NCBI Gene Model \| MGI Sequence Detail	9818	C57BL/6J	± kb
transcript	NR_045269	RefSeq \| MGI Sequence Detail	1147	C57BL/6
polypeptide	Q8CF42	UniProt \| EBI \| MGI Sequence Detail	72	Not Applicable

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Summaries

All 31

Phenotypes 17
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Sp3os:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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