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1700009J07Rik Gene Detail
Summary
  • Symbol
    1700009J07Rik
  • Name
    RIKEN cDNA 1700009J07 gene
  • Synonyms
    4930535B06Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914938
    NCBI Gene: 75188
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:77729254-77731945 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM, cytoband C1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    151 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914938
 lncRNA gene Chr10:77729251-77731948 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005132
 lincRNA gene Chr10:78291289-78293986 (+)
A/J MGP_AJ_G0005115
 lincRNA gene Chr10:75586008-75588705 (+)
AKR/J MGP_AKRJ_G0005093
 lincRNA gene Chr10:77607708-77610405 (+)
BALB/cJ MGP_BALBcJ_G0005096
 lincRNA gene Chr10:75760310-75763007 (+)
C3H/HeJ MGP_C3HHeJ_G0005045
 lincRNA gene Chr10:77693810-77696507 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005246
 lincRNA gene Chr10:81076747-81079444 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004652
 lincRNA gene Chr10:71937911-71940637 (+)
CAST/EiJ MGP_CASTEiJ_G0004992
 lincRNA gene Chr10:78019518-78022191 (+)
CBA/J MGP_CBAJ_G0005035
 lincRNA gene Chr10:84146855-84149552 (+)
DBA/2J MGP_DBA2J_G0005054
 lincRNA gene Chr10:74827101-74829798 (+)
FVB/NJ MGP_FVBNJ_G0005076
 lincRNA gene Chr10:74002276-74004973 (+)
LP/J MGP_LPJ_G0005133
 lincRNA gene Chr10:78735836-78738533 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005059
 lincRNA gene Chr10:86152356-86155053 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005253
 lincRNA gene Chr10:77643318-77646031 (+)
PWK/PhJ MGP_PWKPhJ_G0004943
 lincRNA gene Chr10:74712098-74714787 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004868
 lincRNA gene Chr10:76861813-76864531 (+)
WSB/EiJ MGP_WSBEiJ_G0005039
 lincRNA gene Chr10:77624421-77627134 (+)



Homology
less
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    29 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving 1700009J07Rik
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 75188 NCBI Gene Model | MGI Sequence Detail 2692 C57BL/6J ±  kb
transcript NR_015547 RefSeq | MGI Sequence Detail 914 C57BL/6  
polypeptide Q9D4Z3 UniProt | EBI | MGI Sequence Detail 125 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
Other
Accession IDs
less
MGI:1922438
References
more
  • Summaries
    All 44
    Diseases 2
    Phenotypes 29
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:351211 Wu Y, et al., Cathepsin B abundance, activity and microglial localisation in Alzheimer's disease-Down syndrome and early onset Alzheimer's disease; the role of elevated cystatin B. Acta Neuropathol Commun. 2023 Aug 14;11(1):132
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory