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Pcnx4 Gene Detail
Summary
  • Symbol
    Pcnx4
  • Name
    pecanex homolog 4
  • Synonyms
    1810048J11Rik, Pcnxl4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914958
    NCBI Gene: 67708
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:72583157-72626893 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 30.20 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914958
 protein coding gene Chr12:72583098-72628555 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019826
 protein coding gene Chr12:72377081-72415017 (+)
A/J MGP_AJ_G0019784
 protein coding gene Chr12:69675817-69716452 (+)
AKR/J MGP_AKRJ_G0019760
 protein coding gene Chr12:71778492-71820931 (+)
BALB/cJ MGP_BALBcJ_G0019764
 protein coding gene Chr12:70162706-70200245 (+)
C3H/HeJ MGP_C3HHeJ_G0019569
 protein coding gene Chr12:72220951-72262591 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020216
 protein coding gene Chr12:74651346-74693854 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017836
 protein coding gene Chr12:67141740-67184217 (+)
CAST/EiJ MGP_CASTEiJ_G0019121
 protein coding gene Chr12:66996301-67041533 (+)
CBA/J MGP_CBAJ_G0019539
 protein coding gene Chr12:77443965-77492233 (+)
DBA/2J MGP_DBA2J_G0019655
 protein coding gene Chr12:69580583-69621244 (+)
FVB/NJ MGP_FVBNJ_G0019642
 protein coding gene Chr12:68447530-68485096 (+)
LP/J MGP_LPJ_G0019727
 protein coding gene Chr12:72383988-72421986 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019681
 protein coding gene Chr12:80623330-80669320 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020251
 protein coding gene Chr12:71274656-71313389 (+)
PWK/PhJ MGP_PWKPhJ_G0018886
 protein coding gene Chr12:63874162-63910395 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018681
 protein coding gene Chr12:65687300-65730881 (+)
WSB/EiJ MGP_WSBEiJ_G0019172
 protein coding gene Chr12:71866769-71905446 (+)



Homology
more
  • Human Ortholog
    PCNX4, pecanex 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCNX4, pecanex 4
  • Synonyms
    C14orf135, FBP2, PCNXL4
  • Links
    NCBI Gene ID: 64430
    neXtProt AC: NX_Q63HM2
    UniProt: Q63HM2

  • Chr Location
    14q23.1; chr14:60091911-60169133 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Pcnx4
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    55 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034501 Ensembl Gene Model | MGI Sequence Detail 43737 C57BL/6J ±  kb
transcript ENSMUST00000044352 Ensembl | MGI Sequence Detail 4300 Not Applicable  
polypeptide ENSMUSP00000038916 Ensembl | MGI Sequence Detail 1177 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144941
References
more
  • Summaries
    All 32
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory