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Gabarapl1 Gene Detail
Summary
  • Symbol
    Gabarapl1
  • Name
    GABA type A receptor associated protein like 1
  • Synonyms
    3110025G09Rik, 9130422N19Rik, Apg8l, Atg8l, GECI
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914980
    NCBI Gene: 57436
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:129510155-129519294 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 63.39 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    303 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914980
 protein coding gene Chr6:129510123-129519309 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031351
 protein coding gene Chr6:133203169-133212043 (+)
A/J MGP_AJ_G0031322
 protein coding gene Chr6:128108120-128117139 (+)
AKR/J MGP_AKRJ_G0031250
 protein coding gene Chr6:131603509-131612390 (+)
BALB/cJ MGP_BALBcJ_G0031329
 protein coding gene Chr6:127751846-127761026 (+)
C3H/HeJ MGP_C3HHeJ_G0031053
 protein coding gene Chr6:131802520-131811407 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031788
 protein coding gene Chr6:136701504-136710386 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028934
 protein coding gene Chr6:126428440-126437412 (+)
CAST/EiJ MGP_CASTEiJ_G0030431
 protein coding gene Chr6:132033496-132042734 (+)
CBA/J MGP_CBAJ_G0031013
 protein coding gene Chr6:142084812-142093699 (+)
DBA/2J MGP_DBA2J_G0031170
 protein coding gene Chr6:127064271-127073440 (+)
FVB/NJ MGP_FVBNJ_G0031120
 protein coding gene Chr6:125946260-125955133 (+)
LP/J MGP_LPJ_G0031250
 protein coding gene Chr6:133421676-133430564 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031158
 protein coding gene Chr6:145933666-145942814 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031821
 protein coding gene Chr6:131678326-131687493 (+)
PWK/PhJ MGP_PWKPhJ_G0030149
 protein coding gene Chr6:125342771-125350880 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029978
 protein coding gene Chr6:129699004-129707531 (+)
WSB/EiJ MGP_WSBEiJ_G0030519
 protein coding gene Chr6:132102426-132111644 (+)



Homology
more
  • Human Ortholog
    GABARAPL1, GABA type A receptor associated protein like 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GABARAPL1, GABA type A receptor associated protein like 1
  • Synonyms
    APG8L, APG8-LIKE, ATG8, ATG8B, ATG8L, GEC1
  • Links
    NCBI Gene ID: 23710
    neXtProt AC: NX_Q9H0R8
    UniProt: Q9H0R8

  • Chr Location
    12p13.2; chr12:10212458-10223128 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    33
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    820
  • Tissues
    28
  • cDNA Data
    300
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 57436 NCBI Gene Model | MGI Sequence Detail 9140 C57BL/6J ±  kb
transcript NM_020590 RefSeq | MGI Sequence Detail 1773 C57BL/6  
polypeptide Q8R3R8 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 301
    cDNA 300
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1889388, MGI:1890601, MGI:1920405
References
more
  • Summaries
    All 51
    Developmental Gene Expression 4
    Gene Ontology 12
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory