4930579F01Rik MGI Mouse Gene Detail - MGI:1914991

Symbol

4930579F01Rik
Name

RIKEN cDNA 4930579F01 gene

Feature Type

protein coding gene
IDs

MGI:1914991
NCBI Gene: 67741
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr3:137869839-137899592 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 64.10 cM, cytoband H2
Mapping Data

2 experiments

SNPs within 2kb

1095 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914991	protein coding gene	Chr3:137869839-137945424 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0027926	protein coding gene	Chr3:141219478-141245053 (-)
A/J	MGP_AJ_G0027883	protein coding gene	Chr3:136215026-136239581 (-)
AKR/J	MGP_AKRJ_G0027849	protein coding gene	Chr3:139837867-139862724 (-)
BALB/cJ	MGP_BALBcJ_G0027895	protein coding gene	Chr3:136022665-136047744 (-)
C3H/HeJ	MGP_C3HHeJ_G0027625	protein coding gene	Chr3:140166541-140192067 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0028339	protein coding gene	Chr3:146071111-146099822 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025677	protein coding gene	Chr3:131633971-131658053 (-)
CAST/EiJ	MGP_CASTEiJ_G0027081	protein coding gene	Chr3:139936053-139961777 (-)
CBA/J	MGP_CBAJ_G0027602	protein coding gene	Chr3:151043769-151072538 (-)
DBA/2J	MGP_DBA2J_G0027741	protein coding gene	Chr3:135335596-135360185 (-)
FVB/NJ	MGP_FVBNJ_G0027708	protein coding gene	Chr3:132796442-132821991 (-)
LP/J	MGP_LPJ_G0027851	protein coding gene	Chr3:142610171-142635699 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027740	protein coding gene	Chr3:159141545-159167824 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028397	protein coding gene	Chr3:139380579-139404621 (-)
PWK/PhJ	MGP_PWKPhJ_G0026805	protein coding gene	Chr3:135090301-135118918 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0026632	protein coding gene	Chr3:137481279-137509504 (-)
WSB/EiJ	MGP_WSBEiJ_G0027160	protein coding gene	Chr3:140209481-140237531 (-)

Human Ortholog

C4orf17, chromosome 4 open reading frame 17

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C4orf17, chromosome 4 open reading frame 17
Links

HGNC:25274

NCBI Gene ID: 84103

neXtProt AC: NX_Q53FE4

UniProt: Q53FE4
Chr Location

4q23; chr4:99511012-99542303 (+) GRCh38

MGI Vertebrate Homology

4930579F01Rik stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C4orf17
Gene Tree

4930579F01Rik

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References

1 with disease annotations

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Phenotype Summary

2 phenotypes from 1 allele in 1 genetic background
9 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

4
Chemically induced (other)

1
Endonuclease-mediated

1
Radiation induced

1
Targeted

1
Genomic Mutations

2 involving 4930579F01Rik
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

21 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

43
RefSeq

8
UniProt

5
CCDS

CCDS51081.1, CCDS80031.1

Ensembl

ENSMUSG00000012042 (Evidence)
NCBI Gene

67741

			Length	Strain/Species	Flank
genomic	67741	NCBI Gene Model \| MGI Sequence Detail	29754	C57BL/6J	± kb
transcript	NM_001163385	RefSeq \| MGI Sequence Detail	1804	C57BL/6
polypeptide	NP_001156857	RefSeq \| MGI Sequence Detail	325	C57BL/6

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UniProt

5 Sequences
InterPro Domains

IPR037394 Protein TBATA-like

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All nucleic 4

cDNA 4

Microarray probesets 3

Summaries

All 25

Diseases 1

Phenotypes 9
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for 4930579F01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35885	Chr3:137899585-137899612 (-)	-7 bp
Tssr35884	Chr3:137892502-137892509 (-)	7,086 bp
Tssr35883	Chr3:137892461-137892493 (-)	7,115 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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