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Tmem39a Gene Detail
Summary
  • Symbol
    Tmem39a
  • Name
    transmembrane protein 39a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915096
    NCBI Gene: 67846
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:38379060-38412524 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 26.87 cM, cytoband B4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    922 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915096
 protein coding gene Chr16:38379060-38412524 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022819
 protein coding gene Chr16:37092798-37127767 (+)
A/J MGP_AJ_G0022784
 protein coding gene Chr16:35262815-35296683 (+)
AKR/J MGP_AKRJ_G0022756
 protein coding gene Chr16:36593067-36628014 (+)
BALB/cJ MGP_BALBcJ_G0022785
 protein coding gene Chr16:35375301-35408767 (+)
C3H/HeJ MGP_C3HHeJ_G0022549
 protein coding gene Chr16:36701351-36735203 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023232
 protein coding gene Chr16:37938103-37974064 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020747
 protein coding gene Chr16:35636177-35668256 (+)
CAST/EiJ MGP_CASTEiJ_G0022075
 protein coding gene Chr16:36852975-36888388 (+)
CBA/J MGP_CBAJ_G0022520
 protein coding gene Chr16:39599924-39643769 (+)
DBA/2J MGP_DBA2J_G0022652
 protein coding gene Chr16:35140072-35173686 (+)
FVB/NJ MGP_FVBNJ_G0022627
 protein coding gene Chr16:35167038-35200424 (+)
LP/J MGP_LPJ_G0022720
 protein coding gene Chr16:36772411-36807874 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022646
 protein coding gene Chr16:38711939-38746928 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023247
 protein coding gene Chr16:36559135-36596535 (+)
PWK/PhJ MGP_PWKPhJ_G0021815
 protein coding gene Chr16:35554534-35588491 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021646
 protein coding gene Chr16:36452163-36490517 (+)
WSB/EiJ MGP_WSBEiJ_G0022119
 protein coding gene Chr16:36626210-36659960 (+)



Homology
more
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
  • Synonyms
    SUSR2
  • Links
    NCBI Gene ID: 55254
    neXtProt AC: NX_Q9NV64
    UniProt: Q9NV64

  • Chr Location
    3q13.33; chr3:119428949-119468830 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67846 NCBI Gene Model | MGI Sequence Detail 33465 C57BL/6J ±  kb
transcript NM_026407 RefSeq | MGI Sequence Detail 2869 C57BL/6  
polypeptide Q9CYC3 UniProt | EBI | MGI Sequence Detail 486 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory