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Ccny Gene Detail
Summary
  • Symbol
    Ccny
  • Name
    cyclin Y
  • Synonyms
    1700025H17Rik, 3110050L10Rik, 4631402G10Rik, 5730405I09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915224
    NCBI Gene: 67974
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:9312304-9450154 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 4.91 cM, cytoband A1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2839 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915224
 protein coding gene Chr18:9312304-9450188 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024140
 protein coding gene Chr18:6255746-6383982 (-)
A/J MGP_AJ_G0024102
 protein coding gene Chr18:6219000-6352305 (-)
AKR/J MGP_AKRJ_G0024069
 protein coding gene Chr18:6350098-6498322 (-)
BALB/cJ MGP_BALBcJ_G0024101
 protein coding gene Chr18:6168810-6312999 (-)
C3H/HeJ MGP_C3HHeJ_G0023868
 protein coding gene Chr18:6240065-6395489 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024546
 protein coding gene Chr18:6620843-6758872 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021985
 protein coding gene Chr18:5758503-5902722 (-)
CAST/EiJ MGP_CASTEiJ_G0023345
 protein coding gene Chr18:6223312-6356925 (-)
CBA/J MGP_CBAJ_G0023840
 protein coding gene Chr18:6577827-6723810 (-)
DBA/2J MGP_DBA2J_G0023969
 protein coding gene Chr18:6063099-6195936 (-)
FVB/NJ MGP_FVBNJ_G0023934
 protein coding gene Chr18:6039486-6173242 (-)
LP/J MGP_LPJ_G0024052
 protein coding gene Chr18:6295448-6437401 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023963
 protein coding gene Chr18:6788692-6926366 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024592
 protein coding gene Chr18:6221956-6352641 (-)
PWK/PhJ MGP_PWKPhJ_G0023090
 protein coding gene Chr18:6077552-6210224 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022901
 protein coding gene Chr18:6472722-6619742 (-)
WSB/EiJ MGP_WSBEiJ_G0023411
 protein coding gene Chr18:6184344-6323293 (-)



Homology
more
  • Human Ortholog
    CCNY, cyclin Y
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCNY, cyclin Y
  • Synonyms
    C10orf9, CBCP1, CCNX, CFP1
  • Links
    NCBI Gene ID: 219771
    neXtProt AC: NX_Q8ND76
    UniProt: Q8ND76

  • Chr Location
    10p11.21; chr10:35247025-35572669 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 1 allele in 2 genetic backgrounds
    2 phenotypes from multigenic genotypes
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit impaired adipogenesis and lipid production.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    30
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    748
  • Tissues
    16
  • cDNA Data
    13
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000024286 Ensembl Gene Model | MGI Sequence Detail 137851 C57BL/6J ±  kb
    transcript ENSMUST00000053917 Ensembl | MGI Sequence Detail 5757 Not Applicable  
    polypeptide ENSMUSP00000050001 Ensembl | MGI Sequence Detail 341 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 13
      Primer pair 1
      Other 1

      Microarray probesets 12
    Other
    Accession IDs
    less
    MGI:1918042, MGI:1920467, MGI:1922787
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 5
      Gene Ontology 10
      Phenotypes 9
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:333039 Zhang K, et al., Primary cilia are WNT-transducing organelles whose biogenesis is controlled by a WNT-PP1 axis. Dev Cell. 2023 Jan 23;58(2):139-154.e8
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory