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Trabd Gene Detail
Summary
  • Symbol
    Trabd
  • Name
    TraB domain containing
  • Synonyms
    5730502D15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915226
    NCBI Gene: 67976
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:88960267-88971278 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 44.59 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    288 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915226
 protein coding gene Chr15:88959327-88971280 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022215
 protein coding gene Chr15:90240929-90252894 (+)
A/J MGP_AJ_G0022174
 protein coding gene Chr15:86792497-86804610 (+)
AKR/J MGP_AKRJ_G0022149
 protein coding gene Chr15:89363661-89375615 (+)
BALB/cJ MGP_BALBcJ_G0022180
 protein coding gene Chr15:86895867-86907991 (+)
C3H/HeJ MGP_C3HHeJ_G0021950
 protein coding gene Chr15:89350757-89362709 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022625
 protein coding gene Chr15:93527875-93539873 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020150
 protein coding gene Chr15:83020446-83032609 (+)
CAST/EiJ MGP_CASTEiJ_G0021472
 protein coding gene Chr15:90129653-90141609 (+)
CBA/J MGP_CBAJ_G0021917
 protein coding gene Chr15:96686177-96698122 (+)
DBA/2J MGP_DBA2J_G0022044
 protein coding gene Chr15:86250494-86262447 (+)
FVB/NJ MGP_FVBNJ_G0022023
 protein coding gene Chr15:85314497-85326449 (+)
LP/J MGP_LPJ_G0022115
 protein coding gene Chr15:90408424-90420377 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022043
 protein coding gene Chr15:101107874-101120784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022640
 protein coding gene Chr15:89398139-89410091 (+)
PWK/PhJ MGP_PWKPhJ_G0021213
 protein coding gene Chr15:86294098-86306321 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021047
 protein coding gene Chr15:89132641-89145049 (+)
WSB/EiJ MGP_WSBEiJ_G0021521
 protein coding gene Chr15:89882698-89894640 (+)



Homology
more
  • Human Ortholog
    TRABD, TraB domain containing
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRABD, TraB domain containing
  • Synonyms
    LP6054, PP2447
  • Links
    NCBI Gene ID: 80305
    neXtProt AC: NX_Q9H4I3
    UniProt: Q9H4I3

  • Chr Location
    22q13.33; chr22:50185913-50199598 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    27 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    128
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67976 NCBI Gene Model | MGI Sequence Detail 11012 C57BL/6J ±  kb
    transcript NM_001378758 RefSeq | MGI Sequence Detail 2924 C57BL/6  
    polypeptide Q99JY4 UniProt | EBI | MGI Sequence Detail 376 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 129
      cDNA 129

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2146116
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 1
      Phenotypes 27
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory