8030451A03Rik Gene Detail

Summary

• Symbol
  8030451A03Rik
• Name
  RIKEN cDNA 8030451A03 gene
• Synonyms
  8030463A06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1915353
  NCBI Gene: 100504061
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr4:63898178-64068162 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 34.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  4732 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915353	lncRNA gene	Chr4:63898091-64068162 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015549	unclassified non-coding RNA gene	Chr4:63021973-63192704 (+)
A/J	MGP_AJ_G0015526	unclassified non-coding RNA gene	Chr4:60753259-60918070 (+)
AKR/J	MGP_AKRJ_G0015490	unclassified non-coding RNA gene	Chr4:62406150-62585868 (+)
BALB/cJ	MGP_BALBcJ_G0015488	unclassified non-coding RNA gene	Chr4:60936230-61112078 (+)
C3H/HeJ	MGP_C3HHeJ_G0015311	unclassified non-coding RNA gene	Chr4:62928739-63104778 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015942	unclassified non-coding RNA gene	Chr4:65156477-65334516 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013677	unclassified non-coding RNA gene	Chr4:58083074-58246472 (+)
CAST/EiJ	MGP_CASTEiJ_G0014865	unclassified non-coding RNA gene	Chr4:60930522-61110491 (+)
CBA/J	MGP_CBAJ_G0015292	unclassified non-coding RNA gene	Chr4:67458574-67647149 (+)
DBA/2J	MGP_DBA2J_G0015386	unclassified non-coding RNA gene	Chr4:60604324-60780872 (+)
FVB/NJ	MGP_FVBNJ_G0015393	unclassified non-coding RNA gene	Chr4:59870713-60041981 (+)
LP/J	MGP_LPJ_G0015465	unclassified non-coding RNA gene	Chr4:63308802-63479498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015417	unclassified non-coding RNA gene	Chr4:70530287-70706011 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015983	unclassified non-coding RNA gene	Chr4:62515120-62685414 (+)
PWK/PhJ	MGP_PWKPhJ_G0014651	unclassified non-coding RNA gene	Chr4:59167436-59336026 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014439	unclassified non-coding RNA gene	Chr4:59990500-60172691 (+)
WSB/EiJ	MGP_WSBEiJ_G0014971	unclassified non-coding RNA gene	Chr4:62554417-62737290 (+)

Homology

• Gene Tree
  8030451A03Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000073821 (Evidence)
• NCBI Gene
  100504061

Representative Sequences			Length	Strain/Species
genomic	100504061	NCBI Gene Model | MGI Sequence Detail	169985	C57BL/6J
transcript	NR_190130	RefSeq | MGI Sequence Detail	2532	C57BL/6
polypeptide	Q8CCG2	UniProt | EBI | MGI Sequence Detail	130	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3041164

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 8030451A03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1198	Chr4:63898088-63898093 (+)	-87 bp
Tssr37587	Chr4:63898098-63898107 (+)	-75 bp
Tssr37588	Chr4:63898117-63898120 (+)	-59 bp
Tssr37589	Chr4:63898128-63898141 (+)	-43 bp
Tssr37590	Chr4:63898146-63898153 (+)	-28 bp
Tssr37591	Chr4:63898172-63898183 (+)	0 bp
Tssr37592	Chr4:63898194-63898203 (+)	21 bp
Tssr37593	Chr4:63900877-63900888 (+)	2,705 bp
Tssr37594	Chr4:63916571-63916574 (+)	18,395 bp
Tssr37595	Chr4:63938415-63938431 (+)	40,245 bp