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Herpud2 Gene Detail
Summary
  • Symbol
    Herpud2
  • Name
    HERPUD family member 2
  • Synonyms
    5031400M07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915393
    NCBI Gene: 80517
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:25019428-25063116 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 10.25 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1135 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915393
 protein coding gene Chr9:25012412-25063116 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034496
 protein coding gene Chr9:22517879-22566083 (-)
A/J MGP_AJ_G0034474
 protein coding gene Chr9:22040881-22084681 (-)
AKR/J MGP_AKRJ_G0034400
 protein coding gene Chr9:22469953-22510802 (-)
BALB/cJ MGP_BALBcJ_G0034465
 protein coding gene Chr9:21942634-21986303 (-)
C3H/HeJ MGP_C3HHeJ_G0034177
 protein coding gene Chr9:22801630-22846062 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034986
 protein coding gene Chr9:23385021-23431799 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031916
 protein coding gene Chr9:20983374-21035246 (-)
CAST/EiJ MGP_CASTEiJ_G0033499
 protein coding gene Chr9:22663132-22710791 (-)
CBA/J MGP_CBAJ_G0034150
 protein coding gene Chr9:24242244-24298550 (-)
DBA/2J MGP_DBA2J_G0034308
 protein coding gene Chr9:22018331-22064761 (-)
FVB/NJ MGP_FVBNJ_G0034251
 protein coding gene Chr9:21510657-21559710 (-)
LP/J MGP_LPJ_G0034394
 protein coding gene Chr9:22699760-22744207 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034294
 protein coding gene Chr9:25866499-25917429 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035006
 protein coding gene Chr9:22454928-22501354 (-)
PWK/PhJ MGP_PWKPhJ_G0033205
 protein coding gene Chr9:21966741-22010487 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033039
 protein coding gene Chr9:22496364-22554121 (-)
WSB/EiJ MGP_WSBEiJ_G0033615
 protein coding gene Chr9:22175964-22224940 (-)



Homology
more
  • Human Ortholog
    HERPUD2, HERPUD family member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HERPUD2, HERPUD family member 2
  • Links
    NCBI Gene ID: 64224
    neXtProt AC: NX_Q9BSE4
    UniProt: Q9BSE4

  • Chr Location
    7p14.2; chr7:35632659-35697459 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    829
  • Tissues
    46
  • cDNA Data
    47
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000008429 Ensembl Gene Model | MGI Sequence Detail 43689 C57BL/6J ±  kb
transcript ENSMUST00000008573 Ensembl | MGI Sequence Detail 2781 Not Applicable  
polypeptide ENSMUSP00000008573 Ensembl | MGI Sequence Detail 404 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000008514 homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
    (term hierarchy)
  • InterPro Domains
    IPR039751 Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2
    IPR000626 Ubiquitin-like domain
    IPR029071 Ubiquitin-like domain superfamily
Molecular
Reagents
less
  • All nucleic 47
    cDNA 47

    Microarray probesets 5
Other
Accession IDs
less
MGI:1930872
References
more
  • Summaries
    All 40
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 14
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory