Iqcf3 Gene Detail

Summary

• Symbol
  Iqcf3
• Name
  IQ motif containing F3
• Synonyms
  1700012F17Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1915515
  NCBI Gene: 68265
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:106420588-106438825 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 57.74 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  621 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915515	protein coding gene	Chr9:106420585-106438830 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• MGI Vertebrate Homology
  Iqcf3 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Iqcf3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  4
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  15 strains or lines available

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  4
• UniProt
  6
• CCDS
  CCDS40758.1

• Ensembl
  ENSMUSG00001074846 (Evidence)
• NCBI Gene
  68265

Representative Sequences			Length	Strain/Species
genomic	68265	NCBI Gene Model | MGI Sequence Detail	18238	C57BL/6J
transcript	NM_001368648	RefSeq | MGI Sequence Detail	1168	C57BL/6
polypeptide	Q9D498	UniProt | EBI | MGI Sequence Detail	203	Not Applicable

Protein
Information

• UniProt
  6 Sequences
• Protein Ontology
  PR:000032792 IQ domain-containing protein F2
  (term hierarchy)
• InterPro Domains
  IPR039887 IQ domain-containing protein F
  IPR000048 IQ motif, EF-hand binding site

Molecular
Reagents

• All nucleic 6

  Genomic 2

  cDNA 4

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2143257

References

• Summaries
  All 21

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Iqcf3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3006	Chr9:106438848-106438852 (-)	-25 bp
Tssr91330	Chr9:106438816-106438835 (-)	-1 bp