About   Help   FAQ
Gata6os Gene Detail
Summary
  • Symbol
    Gata6os
  • Name
    GATA binding protein 6, opposite strand
  • Synonyms
    1010001N08Rik, Gata6as, LncGata6
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1915684
    NCBI Gene: 68434
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:11042037-11052567 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 5.62 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    280 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915684
 lncRNA gene Chr18:10987944-11052936 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005769
 lincRNA gene Chr18:8007593-8011076 (-)
A/J MGP_AJ_G0005758
 lincRNA gene Chr18:7930852-7934327 (-)
AKR/J MGP_AKRJ_G0005735
 lincRNA gene Chr18:8151408-8154883 (-)
BALB/cJ MGP_BALBcJ_G0005737
 lincRNA gene Chr18:7919457-7922930 (-)
C3H/HeJ MGP_C3HHeJ_G0005685
 lincRNA gene Chr18:8045236-8048708 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005898
 lincRNA gene Chr18:8474699-8478177 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005243
 lincRNA gene Chr18:7613632-7617103 (-)
CAST/EiJ MGP_CASTEiJ_G0005627
 lincRNA gene Chr18:7955823-7959340 (-)
CBA/J MGP_CBAJ_G0005672
 lincRNA gene Chr18:8549821-8553335 (-)
DBA/2J MGP_DBA2J_G0005690
 lincRNA gene Chr18:7804256-7807729 (-)
FVB/NJ MGP_FVBNJ_G0005717
 lincRNA gene Chr18:7758407-7761882 (-)
LP/J MGP_LPJ_G0005771
 lincRNA gene Chr18:8129883-8133366 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005703
 lincRNA gene Chr18:8768719-8772199 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005897
 lincRNA gene Chr18:7989212-7992684 (-)
PWK/PhJ MGP_PWKPhJ_G0005571
 lincRNA gene Chr18:7846531-7850121 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005487
 lincRNA gene Chr18:8160561-8164027 (-)
WSB/EiJ MGP_WSBEiJ_G0005678
 lincRNA gene Chr18:7959319-7962787 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 5 alleles in 5 genetic backgrounds
    4 phenotypes from multigenic genotypes
    2 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit reduced intestinal stem cells with impaired organoid formation capacity resulting in shorter crypts and villi, impaired intestinal epithelium regeneration after radiation injury, and decreased AOM/DSS-induced tumors.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    22
  • cDNA Data
    5
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      43
    • RefSeq
      2
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 68434 NCBI Gene Model | MGI Sequence Detail 10531 C57BL/6J ±  kb
    transcript NR_105022 RefSeq | MGI Sequence Detail 730 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 5
      Primer pair 2
    Other
    Accession IDs
    less
    MGI:6367588
    References
    more
    • Summaries
      All 14
      Developmental Gene Expression 3
      Phenotypes 2
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:330639 Han X, et al., Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. J Mol Cell Biol. 2018 Apr 1;10(2):175-178
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory