1110018N20Rik Gene Detail

Summary

• Symbol
  1110018N20Rik
• Name
  RIKEN cDNA 1110018N20 gene
• Synonyms
  1190017L20Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1915753
  NCBI Gene: 68941
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:167030669-167034447 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 87.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915753	lncRNA gene	Chr2:167030622-167034728 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015490	unclassified non-coding RNA gene	Chr2:172898825-172902478 (+)
A/J	MGP_AJ_G0015467	unclassified non-coding RNA gene	Chr2:165797292-165802474 (+)
AKR/J	MGP_AKRJ_G0015431	unclassified non-coding RNA gene	Chr2:170734743-170738899 (+)
BALB/cJ	MGP_BALBcJ_G0015430	unclassified non-coding RNA gene	Chr2:166142455-166146268 (+)
C3H/HeJ	MGP_C3HHeJ_G0015253	unclassified non-coding RNA gene	Chr2:171101528-171106605 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015884	unclassified non-coding RNA gene	Chr2:177928599-177934512 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013622	unclassified non-coding RNA gene	Chr2:159123059-159127227 (+)
CAST/EiJ	MGP_CASTEiJ_G0014805	unclassified non-coding RNA gene	Chr2:171562815-171571681 (+)
CBA/J	MGP_CBAJ_G0015234	unclassified non-coding RNA gene	Chr2:184444698-184450027 (+)
DBA/2J	MGP_DBA2J_G0015328	unclassified non-coding RNA gene	Chr2:164913734-164917535 (+)
FVB/NJ	MGP_FVBNJ_G0015335	unclassified non-coding RNA gene	Chr2:163424451-163428597 (+)
LP/J	MGP_LPJ_G0015406	unclassified non-coding RNA gene	Chr2:172920278-172925588 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015359	unclassified non-coding RNA gene	Chr2:187844246-187849296 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015924	unclassified non-coding RNA gene	Chr2:170638095-170644549 (+)
PWK/PhJ	MGP_PWKPhJ_G0014593	unclassified non-coding RNA gene	Chr2:164569221-164573934 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014381	unclassified non-coding RNA gene	Chr2:169590061-169594174 (+)
WSB/EiJ	MGP_WSBEiJ_G0014912	unclassified non-coding RNA gene	Chr2:171548923-171552829 (+)

Homology

• Gene Tree
  1110018N20Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  5

• Ensembl
  ENSMUSG00000085151 (Evidence)
• NCBI Gene
  68941

Representative Sequences			Length	Strain/Species
genomic	68941	NCBI Gene Model | MGI Sequence Detail	3779	C57BL/6J
transcript	NR_190070	RefSeq | MGI Sequence Detail	1048	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1916191

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1110018N20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21792	Chr2:167031580-167031596 (+)	919 bp
Tssr21793	Chr2:167031599-167031613 (+)	937 bp