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Cilp2 Gene Detail
Summary
  • Symbol
    Cilp2
  • Name
    cartilage intermediate layer protein 2
  • Synonyms
    1110031K21Rik, CLIP-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915959
    NCBI Gene: 68709
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:70333016-70340042 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 34.01 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    229 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915959
 protein coding gene Chr8:70333016-70340337 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033680
 protein coding gene Chr8:70109511-70116826 (-)
A/J MGP_AJ_G0033663
 protein coding gene Chr8:67261478-67268796 (-)
AKR/J MGP_AKRJ_G0033588
 protein coding gene Chr8:69168130-69175448 (-)
BALB/cJ MGP_BALBcJ_G0033659
 protein coding gene Chr8:67487753-67495070 (-)
C3H/HeJ MGP_C3HHeJ_G0033369
 protein coding gene Chr8:69829419-69836736 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034176
 protein coding gene Chr8:72777397-72784739 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031120
 protein coding gene Chr8:62085361-62092632 (-)
CAST/EiJ MGP_CASTEiJ_G0032694
 protein coding gene Chr8:69289410-69296778 (-)
CBA/J MGP_CBAJ_G0033347
 protein coding gene Chr8:75415417-75422734 (-)
DBA/2J MGP_DBA2J_G0033501
 protein coding gene Chr8:66987518-66995261 (-)
FVB/NJ MGP_FVBNJ_G0033442
 protein coding gene Chr8:66083526-66091364 (-)
LP/J MGP_LPJ_G0033588
 protein coding gene Chr8:70159818-70167135 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033486
 protein coding gene Chr8:78072631-78079949 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034194
 protein coding gene Chr8:69350110-69357427 (-)
PWK/PhJ MGP_PWKPhJ_G0032402
 protein coding gene Chr8:66272320-66279834 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032238
 protein coding gene Chr8:68326322-68333688 (-)
WSB/EiJ MGP_WSBEiJ_G0032809
 protein coding gene Chr8:69719066-69726383 (-)



Homology
more
  • Human Ortholog
    CILP2, cartilage intermediate layer protein 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CILP2, cartilage intermediate layer protein 2
  • Synonyms
    CLIP-2
  • Links
    NCBI Gene ID: 148113
    neXtProt AC: NX_Q8IUL8
    UniProt: Q8IUL8

  • Chr Location
    19p13.11; chr19:19538248-19546659 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    747
  • Tissues
    19
  • cDNA Data
    9
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68709 NCBI Gene Model | MGI Sequence Detail 7027 C57BL/6J ±  kb
transcript NM_026818 RefSeq | MGI Sequence Detail 4022 Not Specified  
polypeptide D3Z7H8 UniProt | EBI | MGI Sequence Detail 1162 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 9
    Primer pair 4
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2142398
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory