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Synpo2l Gene Detail
Summary
  • Symbol
    Synpo2l
  • Name
    synaptopodin 2-like
  • Synonyms
    1110054M18Rik, Chap
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916010
    NCBI Gene: 68760
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:20709014-20718422 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 11.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    222 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916010
 protein coding gene Chr14:20709013-20718422 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021041
 protein coding gene Chr14:13424647-13434053 (-)
A/J MGP_AJ_G0020990
 protein coding gene Chr14:13115350-13124750 (-)
AKR/J MGP_AKRJ_G0020967
 protein coding gene Chr14:13639900-13649295 (-)
BALB/cJ MGP_BALBcJ_G0020993
 protein coding gene Chr14:13217569-13226917 (-)
C3H/HeJ MGP_C3HHeJ_G0020777
 protein coding gene Chr14:13579545-13588957 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021426
 protein coding gene Chr14:13924876-13934272 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018994
 protein coding gene Chr14:13427790-13437359 (-)
CAST/EiJ MGP_CASTEiJ_G0020301
 protein coding gene Chr14:13345221-13354652 (-)
CBA/J MGP_CBAJ_G0020743
 protein coding gene Chr14:14635030-14645473 (-)
DBA/2J MGP_DBA2J_G0020866
 protein coding gene Chr14:12938355-12948461 (-)
FVB/NJ MGP_FVBNJ_G0020849
 protein coding gene Chr14:12833034-12842380 (-)
LP/J MGP_LPJ_G0020942
 protein coding gene Chr14:13652716-13662084 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020875
 protein coding gene Chr14:14412869-14422224 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021459
 protein coding gene Chr14:13432868-13442241 (-)
PWK/PhJ MGP_PWKPhJ_G0020050
 protein coding gene Chr14:12508398-12518025 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019872
 protein coding gene Chr14:13221539-13232501 (-)
WSB/EiJ MGP_WSBEiJ_G0020357
 protein coding gene Chr14:13414228-13423619 (-)



Homology
more
  • Human Ortholog
    SYNPO2L, synaptopodin 2 like
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SYNPO2L, synaptopodin 2 like
  • Links
    NCBI Gene ID: 79933
    neXtProt AC: NX_Q9H987
    UniProt: Q9H987

  • Chr Location
    10q22.2; chr10:73644881-73663803 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    869
  • Tissues
    49
  • cDNA Data
    11
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039376 Ensembl Gene Model | MGI Sequence Detail 9409 C57BL/6J ±  kb
transcript ENSMUST00000117386 Ensembl | MGI Sequence Detail 3979 Not Applicable  
polypeptide ENSMUSP00000112792 Ensembl | MGI Sequence Detail 978 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 11
    Primer pair 5

    Microarray probesets 6
References
more
  • Summaries
    All 29
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:251818 van Eldik W, et al., Z-disc protein CHAPb induces cardiomyopathy and contractile dysfunction in the postnatal heart. PLoS One. 2017;12(12):e0189139
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory