Ctrcos Gene Detail

Summary

• Symbol
  Ctrcos
• Name
  chymotrypsin C, opposite strand
• Synonyms
  1810035I16Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1916389
  NCBI Gene: 69139
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:141571632-141574301 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 74.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916389	antisense lncRNA gene	Chr4:141571632-141574301 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003989	antisense lncRNA gene	Chr4:144949851-144952512 (+)
A/J	MGP_AJ_G0003970	antisense lncRNA gene	Chr4:138630603-138633268 (+)
AKR/J	MGP_AKRJ_G0003947	antisense lncRNA gene	Chr4:142659379-142662039 (+)
BALB/cJ	MGP_BALBcJ_G0003956	antisense lncRNA gene	Chr4:139317319-139319979 (+)
C3H/HeJ	MGP_C3HHeJ_G0003903	antisense lncRNA gene	Chr4:143017251-143019911 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004104	antisense lncRNA gene	Chr4:149988304-149990973 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003866	antisense lncRNA gene	Chr4:141281290-141283984 (+)
CBA/J	MGP_CBAJ_G0003896	antisense lncRNA gene	Chr4:154414944-154417604 (+)
DBA/2J	MGP_DBA2J_G0003912	antisense lncRNA gene	Chr4:139015934-139018609 (+)
FVB/NJ	MGP_FVBNJ_G0003931	antisense lncRNA gene	Chr4:138138729-138141395 (+)
LP/J	MGP_LPJ_G0003992	antisense lncRNA gene	Chr4:144954724-144957397 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003919	antisense lncRNA gene	Chr4:158138971-158141602 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004099	antisense lncRNA gene	Chr4:143181803-143184469 (+)
PWK/PhJ	MGP_PWKPhJ_G0003820	antisense lncRNA gene	Chr4:135914474-135917325 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003766	antisense lncRNA gene	Chr4:138981721-138984434 (+)
WSB/EiJ	MGP_WSBEiJ_G0003902	antisense lncRNA gene	Chr4:143439250-143441916 (+)

Homology

• Gene Tree
  Ctrcos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Ctrcos
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000086818 (Evidence)
• NCBI Gene
  69139

Representative Sequences			Length	Strain/Species
genomic	69139	NCBI Gene Model | MGI Sequence Detail	2670	C57BL/6J
transcript	NR_040641	RefSeq | MGI Sequence Detail	322	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Ctrcos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40117	Chr4:141571611-141571621 (+)	-16 bp