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Cimap1a Gene Detail
Summary
  • Symbol
    Cimap1a
  • Name
    ciliary microtubule associated protein 1A
  • Synonyms
    1700011O04Rik, Odf3, SHIPPO1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916537
    NCBI Gene: 69287
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140427829-140430838 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 86.05 cM, cytoband F5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    172 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916537
 protein coding gene Chr7:140427718-140430931 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033194
 protein coding gene Chr7:145982656-145985869 (+)
A/J MGP_AJ_G0033176
 protein coding gene Chr7:141831893-141835106 (+)
AKR/J MGP_AKRJ_G0033108
 protein coding gene Chr7:145718166-145721361 (+)
BALB/cJ MGP_BALBcJ_G0033177
 protein coding gene Chr7:141558651-141561864 (+)
C3H/HeJ MGP_C3HHeJ_G0032891
 protein coding gene Chr7:145476696-145479909 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033688
 protein coding gene Chr7:151322216-151325429 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030661
 protein coding gene Chr7:143041033-143044248 (+)
CAST/EiJ MGP_CASTEiJ_G0032221
 protein coding gene Chr7:137773843-137777038 (+)
CBA/J MGP_CBAJ_G0032863
 protein coding gene Chr7:156452550-156455745 (+)
DBA/2J MGP_DBA2J_G0033016
 protein coding gene Chr7:139769619-139772832 (+)
FVB/NJ MGP_FVBNJ_G0032968
 protein coding gene Chr7:139679735-139682948 (+)
LP/J MGP_LPJ_G0033110
 protein coding gene Chr7:147483321-147486534 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033001
 protein coding gene Chr7:157120012-157123225 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033708
 protein coding gene Chr7:144704467-144707680 (+)
PWK/PhJ MGP_PWKPhJ_G0031926
 protein coding gene Chr7:133037981-133041176 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031772
 protein coding gene Chr7:131523548-131526768 (+)
WSB/EiJ MGP_WSBEiJ_G0032332
 protein coding gene Chr7:145624269-145627464 (+)



Homology
more
  • Human Ortholog
    CIMAP1A, ciliary microtubule associated protein 1A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CIMAP1A, ciliary microtubule associated protein 1A
  • Synonyms
    CT135, ODF3, SHIPPO1, TISP50
  • Links
    NCBI Gene ID: 113746
    neXtProt AC: NX_Q96PU9
    UniProt: Q96PU9

  • Chr Location
    11p15.5; chr11:196761-200261 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69287 NCBI Gene Model | MGI Sequence Detail 3010 C57BL/6J ±  kb
transcript NM_027019 RefSeq | MGI Sequence Detail 924 Not Specified  
polypeptide Q920N1 UniProt | EBI | MGI Sequence Detail 254 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
Other
Accession IDs
less
MGI:7482241
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:338030 Zhou L, et al., Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility. Cell. 2023 Jun 22;186(13):2897-2910.e19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory