1700003D09Rik Gene Detail

Summary

• Symbol
  1700003D09Rik
• Name
  RIKEN cDNA 1700003D09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916588
  NCBI Gene: 69338
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:98241544-98249109 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916588	lncRNA gene	Chr11:98241544-98249109 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015206	unclassified non-coding RNA gene	Chr11:100886352-100896063 (-)
A/J	MGP_AJ_G0015180	unclassified non-coding RNA gene	Chr11:96697400-96704964 (-)
AKR/J	MGP_AKRJ_G0015143	unclassified non-coding RNA gene	Chr11:99688402-99695970 (-)
BALB/cJ	MGP_BALBcJ_G0015142	unclassified non-coding RNA gene	Chr11:97187910-97195479 (-)
C3H/HeJ	MGP_C3HHeJ_G0014966	unclassified non-coding RNA gene	Chr11:99824666-99832239 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015599	unclassified non-coding RNA gene	Chr11:103962203-103969781 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013342	unclassified non-coding RNA gene	Chr11:94136784-94144392 (-)
CAST/EiJ	MGP_CASTEiJ_G0014519	unclassified non-coding RNA gene	Chr11:100699758-100707368 (-)
CBA/J	MGP_CBAJ_G0014945	unclassified non-coding RNA gene	Chr11:108280722-108288292 (-)
DBA/2J	MGP_DBA2J_G0015038	unclassified non-coding RNA gene	Chr11:96238942-96246518 (-)
FVB/NJ	MGP_FVBNJ_G0015050	unclassified non-coding RNA gene	Chr11:95747094-95754659 (-)
LP/J	MGP_LPJ_G0015119	unclassified non-coding RNA gene	Chr11:101367673-101375248 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015076	unclassified non-coding RNA gene	Chr11:108080191-108087784 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015638	unclassified non-coding RNA gene	Chr11:100019997-100028212 (-)
PWK/PhJ	MGP_PWKPhJ_G0014311	unclassified non-coding RNA gene	Chr11:97245196-97253710 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014098	unclassified non-coding RNA gene	Chr11:99725972-99733509 (-)
WSB/EiJ	MGP_WSBEiJ_G0014622	unclassified non-coding RNA gene	Chr11:99927857-99938474 (-)

Homology

• Gene Tree
  1700003D09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving 1700003D09Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085944 (Evidence)
• NCBI Gene
  69338

Representative Sequences			Length	Strain/Species
genomic	69338	NCBI Gene Model | MGI Sequence Detail	7566	C57BL/6J
transcript	NR_045477	RefSeq | MGI Sequence Detail	1389	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 1700003D09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110531	Chr11:98250291-98250302 (-)	-1,188 bp
Tssr110530	Chr11:98249062-98249079 (-)	38 bp