1700003I22Rik Gene Detail

Summary

• Symbol
  1700003I22Rik
• Name
  RIKEN cDNA 1700003I22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916606
  NCBI Gene: 69356
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:56058137-56059362 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916606	lncRNA gene	Chr1:56058137-56059362 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004834	lincRNA gene	Chr1:55764905-55766130 (+)
A/J	MGP_AJ_G0004815	lincRNA gene	Chr1:53832130-53833355 (+)
AKR/J	MGP_AKRJ_G0004794	lincRNA gene	Chr1:55280904-55282123 (+)
BALB/cJ	MGP_BALBcJ_G0004797	lincRNA gene	Chr1:53881060-53882279 (+)
C3H/HeJ	MGP_C3HHeJ_G0004745	lincRNA gene	Chr1:55550537-55551762 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004947	lincRNA gene	Chr1:58091145-58092370 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004376	lincRNA gene	Chr1:49883109-49884358 (+)
CAST/EiJ	MGP_CASTEiJ_G0004699	lincRNA gene	Chr1:54829663-54830888 (+)
CBA/J	MGP_CBAJ_G0004738	lincRNA gene	Chr1:59747705-59748930 (+)
DBA/2J	MGP_DBA2J_G0004756	lincRNA gene	Chr1:53279567-53280792 (+)
FVB/NJ	MGP_FVBNJ_G0004776	lincRNA gene	Chr1:52593573-52594798 (+)
LP/J	MGP_LPJ_G0004835	lincRNA gene	Chr1:56617221-56618446 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004760	lincRNA gene	Chr1:62819859-62821084 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004951	lincRNA gene	Chr1:55257167-55258392 (+)
PWK/PhJ	MGP_PWKPhJ_G0004652	lincRNA gene	Chr1:52609586-52610811 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004578	lincRNA gene	Chr1:54874950-54876176 (+)
WSB/EiJ	MGP_WSBEiJ_G0004743	lincRNA gene	Chr1:54938996-54940215 (+)

Homology

• Gene Tree
  1700003I22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700003I22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000100372 (Evidence)
• NCBI Gene
  69356

Representative Sequences			Length	Strain/Species
genomic	69356	NCBI Gene Model | MGI Sequence Detail	1226	C57BL/6J
transcript	NR_126075	RefSeq | MGI Sequence Detail	482	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700003I22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6732	Chr1:56058113-56058152 (+)	-4 bp
Tssr6733	Chr1:56059033-56059038 (+)	899 bp