Cypt3 Gene Detail

Summary

• Symbol
  Cypt3
• Name
  cysteine-rich perinuclear theca 3
• Synonyms
  1700006H02Rik, Ckt1r1

• Feature Type
  protein coding gene
• IDs
  MGI:1916611
  NCBI Gene: 69361
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:152341589-152342425 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.65 cM, cytoband F3
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916611	protein coding gene	ChrX:152341589-152342431 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036196	protein coding gene	ChrX:151383907-151384743 (+)
A/J	MGP_AJ_G0036173	protein coding gene	ChrX:150570304-150571140 (+)
AKR/J	MGP_AKRJ_G0036098	protein coding gene	ChrX:155408023-155408859 (+)
BALB/cJ	MGP_BALBcJ_G0036164	protein coding gene	ChrX:148744319-148745155 (+)
C3H/HeJ	MGP_C3HHeJ_G0035871	protein coding gene	ChrX:151644009-151644845 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036688	protein coding gene	ChrX:155766646-155767482 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033512	protein coding gene	ChrX:142226715-142227564 (+)
CAST/EiJ	MGP_CASTEiJ_G0034960	protein coding gene	ChrX:86898364-86899275 (+)
CBA/J	MGP_CBAJ_G0035848	protein coding gene	ChrX:160265384-160266220 (+)
DBA/2J	MGP_DBA2J_G0036006	protein coding gene	ChrX:149623336-149624172 (+)
FVB/NJ	MGP_FVBNJ_G0035940	protein coding gene	ChrX:148754511-148755347 (+)
LP/J	MGP_LPJ_G0036097	protein coding gene	ChrX:152460409-152461245 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035976	protein coding gene	ChrX:168525406-168526242 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036723	protein coding gene	ChrX:150903147-150903983 (+)
PWK/PhJ	MGP_PWKPhJ_G0034857	protein coding gene	ChrX:127903695-127904531 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034682	protein coding gene	ChrX:131391755-131392568 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cypt3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  2
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  4
• UniProt
  6
• CCDS
  CCDS30483.1, CCDS81188.1

• Ensembl
  ENSMUSG00000048573 (Evidence)
• NCBI Gene
  69361

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048573	Ensembl Gene Model | MGI Sequence Detail	837	C57BL/6J
transcript	ENSMUST00000112573	Ensembl | MGI Sequence Detail	669	Not Applicable
polypeptide	ENSMUSP00000108192	Ensembl | MGI Sequence Detail	174	Not Applicable

Protein
Information

• UniProt
  6 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:105251 Hansen MA, et al., Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Mol Reprod Dev. 2006 Feb 13;73(5):568-579

TSS for Cypt3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162412	ChrX:152341587-152341590 (+)	0 bp