1700013G24Rik Gene Detail

Summary

• Symbol
  1700013G24Rik
• Name
  RIKEN cDNA 1700013G24 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1916630
  NCBI Gene: 69380
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:137180607-137182772 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 69.92 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916630	protein coding gene	Chr4:137180595-137182772 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028982	protein coding gene	Chr4:140087060-140089211 (+)
A/J	MGP_AJ_G0028941	protein coding gene	Chr4:134130822-134132994 (+)
AKR/J	MGP_AKRJ_G0028893	protein coding gene	Chr4:137986874-137989032 (+)
BALB/cJ	MGP_BALBcJ_G0028965	protein coding gene	Chr4:134813540-134815700 (+)
C3H/HeJ	MGP_C3HHeJ_G0028679	protein coding gene	Chr4:138316592-138318752 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029406	protein coding gene	Chr4:145089572-145091723 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026677	protein coding gene	Chr4:127142127-127144223 (+)
CAST/EiJ	MGP_CASTEiJ_G0028111	protein coding gene	Chr4:136452859-136455027 (+)
CBA/J	MGP_CBAJ_G0028644	protein coding gene	Chr4:149159138-149161298 (+)
DBA/2J	MGP_DBA2J_G0028793	protein coding gene	Chr4:134524200-134526360 (+)
FVB/NJ	MGP_FVBNJ_G0028760	protein coding gene	Chr4:133515176-133517336 (+)
LP/J	MGP_LPJ_G0028892	protein coding gene	Chr4:140181219-140183370 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028786	protein coding gene	Chr4:153210183-153212332 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029444	protein coding gene	Chr4:138460601-138462742 (+)
PWK/PhJ	MGP_PWKPhJ_G0027831	protein coding gene	Chr4:131345118-131347290 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027657	protein coding gene	Chr4:134236716-134238890 (+)
WSB/EiJ	MGP_WSBEiJ_G0028189	protein coding gene	Chr4:138656935-138659111 (+)

Homology

• MGI Vertebrate Homology
  1700013G24Rik stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  1700013G24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  2
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  3 involving 1700013G24Rik
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS18818.1

• Ensembl
  ENSMUSG00000041399 (Evidence)
• NCBI Gene
  69380

Representative Sequences			Length	Strain/Species
genomic	69380	NCBI Gene Model | MGI Sequence Detail	2166	C57BL/6J
transcript	NM_027063	RefSeq | MGI Sequence Detail	1036	C57BL/6
polypeptide	NP_081339	RefSeq | MGI Sequence Detail	286	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2140320

References

• Summaries
  All 23

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700013G24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39746	Chr4:137180564-137180627 (+)	-11 bp
Tssr39747	Chr4:137180631-137180646 (+)	32 bp
Tssr39748	Chr4:137181904-137181917 (+)	1,304 bp
Tssr39749	Chr4:137182072-137182083 (+)	1,471 bp
Tssr39750	Chr4:137182089-137182095 (+)	1,485 bp