Ms4a19 MGI Mouse Gene Detail - MGI:1916666 - membrane-spanning 4-domains, subfamily A, member 19

Symbol

Ms4a19
Name

membrane-spanning 4-domains, subfamily A, member 19
Synonyms

1700025F22Rik

Feature Type

protein coding gene
IDs

MGI:1916666
NCBI Gene: 69416
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr19:11117028-11142684 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 7.82 cM, cytoband B
Mapping Data

2 experiments

SNPs within 2kb

882 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916666	protein coding gene	Chr19:11117026-11142987 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0024870	protein coding gene	Chr19:8530366-8559760 (-)
A/J	MGP_AJ_G0024838	protein coding gene	Chr19:7970048-7993608 (-)
AKR/J	MGP_AKRJ_G0024813	protein coding gene	Chr19:8270849-8295709 (-)
BALB/cJ	MGP_BALBcJ_G0024838	protein coding gene	Chr19:8005280-8030505 (-)
C3H/HeJ	MGP_C3HHeJ_G0024604	protein coding gene	Chr19:8154181-8180388 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025286	protein coding gene	Chr19:8919845-8949367 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022713	protein coding gene	Chr19:8382690-8405997 (-)
CAST/EiJ	MGP_CASTEiJ_G0024077	protein coding gene	Chr19:7798477-7824318 (-)
CBA/J	MGP_CBAJ_G0024578	protein coding gene	Chr19:8962992-8991394 (-)
DBA/2J	MGP_DBA2J_G0024705	protein coding gene	Chr19:7962173-7987618 (-)
FVB/NJ	MGP_FVBNJ_G0024672	protein coding gene	Chr19:8000636-8024728 (-)
LP/J	MGP_LPJ_G0024792	protein coding gene	Chr19:8480220-8514053 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024699	protein coding gene	Chr19:8847161-8877663 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025334	protein coding gene	Chr19:8295749-8324158 (-)
PWK/PhJ	MGP_PWKPhJ_G0023822	protein coding gene	Chr19:7422082-7445825 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0023627	protein coding gene	Chr19:7500318-7524120 (-)
WSB/EiJ	MGP_WSBEiJ_G0024139	protein coding gene	Chr19:8181072-8210554 (-)

Human Ortholog

MS4A19P, membrane spanning 4-domains A19, pseudogene

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MS4A19P, membrane spanning 4-domains A19, pseudogene
Links

HGNC:53877

NCBI Gene ID: 116435280
Chr Location

11q12.2; chr11:60577856-60608418 (+) GRCh38

MGI Vertebrate Homology

Ms4a19 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: MS4A19P
Gene Tree

Ms4a19

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Targeted

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

9 strains or lines available

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All GO Annotations

2
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

7

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

46
RefSeq

10
UniProt

2
CCDS

CCDS50394.1

Ensembl

ENSMUSG00000024728 (Evidence)
NCBI Gene

69416

			Length	Strain/Species	Flank
genomic	ENSMUSG00000024728	Ensembl Gene Model \| MGI Sequence Detail	25657	C57BL/6J	± kb
transcript	ENSMUST00000078770	Ensembl \| MGI Sequence Detail	650	Not Applicable
polypeptide	ENSMUSP00000077828	Ensembl \| MGI Sequence Detail	111	Not Applicable

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UniProt

2 Sequences

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All nucleic 7

cDNA 7

Microarray probesets 5

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MGI:6355457

Summaries

All 21

Gene Ontology 1

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Ms4a19:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5446	Chr19:11142961-11142968 (-)	-281 bp
Tssr158298	Chr19:11142927-11142934 (-)	-247 bp
Tssr158297	Chr19:11142716-11142720 (-)	-34 bp
Tssr158296	Chr19:11142705-11142714 (-)	-26 bp
Tssr158295	Chr19:11142662-11142700 (-)	3 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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