1700023H06Rik Gene Detail

Summary

• Symbol
  1700023H06Rik
• Name
  RIKEN cDNA 1700023H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916692
  NCBI Gene: 69442
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:81032343-81033643 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 41.95 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916692	lncRNA gene	Chr13:81032343-81033643 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015259	unclassified non-coding RNA gene	Chr13:81615813-81617120 (-)
A/J	MGP_AJ_G0015233	unclassified non-coding RNA gene	Chr13:78779035-78780335 (-)
AKR/J	MGP_AKRJ_G0015196	unclassified non-coding RNA gene	Chr13:81114544-81115844 (-)
BALB/cJ	MGP_BALBcJ_G0015195	unclassified non-coding RNA gene	Chr13:79306307-79307607 (-)
C3H/HeJ	MGP_C3HHeJ_G0015019	unclassified non-coding RNA gene	Chr13:80812279-80813580 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015652	unclassified non-coding RNA gene	Chr13:84268451-84269751 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013394	unclassified non-coding RNA gene	Chr13:75295739-75297035 (-)
CAST/EiJ	MGP_CASTEiJ_G0014572	unclassified non-coding RNA gene	Chr13:79938677-79939975 (-)
CBA/J	MGP_CBAJ_G0014998	unclassified non-coding RNA gene	Chr13:87491928-87493229 (-)
DBA/2J	MGP_DBA2J_G0015091	unclassified non-coding RNA gene	Chr13:78432207-78433508 (-)
FVB/NJ	MGP_FVBNJ_G0015102	unclassified non-coding RNA gene	Chr13:77527618-77528918 (-)
LP/J	MGP_LPJ_G0015172	unclassified non-coding RNA gene	Chr13:81833714-81835014 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015129	unclassified non-coding RNA gene	Chr13:86356761-86358062 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015691	unclassified non-coding RNA gene	Chr13:80498679-80499979 (-)
PWK/PhJ	MGP_PWKPhJ_G0014364	unclassified non-coding RNA gene	Chr13:77331430-77332720 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014151	unclassified non-coding RNA gene	Chr13:76743619-76744906 (-)
WSB/EiJ	MGP_WSBEiJ_G0014675	unclassified non-coding RNA gene	Chr13:80955306-80956642 (-)

Homology

• Gene Tree
  1700023H06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700023H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000089827 (Evidence)
• NCBI Gene
  69442

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089827	Ensembl Gene Model | MGI Sequence Detail	1301	C57BL/6J
transcript	ENSMUST00000161006	Ensembl | MGI Sequence Detail	1044	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700023H06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123310	Chr13:81034121-81034159 (-)	-497 bp
Tssr123309	Chr13:81033716-81033736 (-)	-83 bp
Tssr123308	Chr13:81033667-81033678 (-)	-30 bp
Tssr123307	Chr13:81033628-81033651 (-)	3 bp
Tssr123306	Chr13:81032845-81032864 (-)	788 bp