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Snhg12 Gene Detail
Summary
  • Symbol
    Snhg12
  • Name
    small nucleolar RNA host gene 12
  • Synonyms
    2310005L22Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1916721
    NCBI Gene: 100039864
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:132035989-132038335 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.16 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    207 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916721
 lncRNA gene Chr4:132035932-132038762 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006530
 lincRNA gene Chr4:134448509-134450861 (+)
A/J MGP_AJ_G0006522
 lincRNA gene Chr4:128864576-128866867 (+)
AKR/J MGP_AKRJ_G0006496
 lincRNA gene Chr4:132483717-132486063 (+)
BALB/cJ MGP_BALBcJ_G0006496
 lincRNA gene Chr4:129474504-129476850 (+)
C3H/HeJ MGP_C3HHeJ_G0006446
 lincRNA gene Chr4:132740531-132742877 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006662
 lincRNA gene Chr4:139303544-139305890 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005939
 lincRNA gene Chr4:121941519-121943932 (+)
CAST/EiJ MGP_CASTEiJ_G0006378
 lincRNA gene Chr4:130816007-130818352 (+)
CBA/J MGP_CBAJ_G0006429
 lincRNA gene Chr4:142876218-142878564 (+)
DBA/2J MGP_DBA2J_G0006451
 lincRNA gene Chr4:129287763-129290109 (+)
FVB/NJ MGP_FVBNJ_G0006473
 lincRNA gene Chr4:128135576-128137890 (+)
LP/J MGP_LPJ_G0006531
 lincRNA gene Chr4:134606012-134609592 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006460
 lincRNA gene Chr4:147467081-147469449 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006666
 lincRNA gene Chr4:132888481-132890827 (+)
PWK/PhJ MGP_PWKPhJ_G0006315
 lincRNA gene Chr4:125966528-125968936 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006224
 lincRNA gene Chr4:128759882-128762241 (+)
WSB/EiJ MGP_WSBEiJ_G0006423
 lincRNA gene Chr4:133073240-133075532 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    118
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    113
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Snhg12
  • Find Mice (IMSR)
    10 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    45
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100039864 NCBI Gene Model | MGI Sequence Detail 2347 C57BL/6J ±  kb
transcript NR_029468 RefSeq | MGI Sequence Detail 606 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:337694 Li Y, et al., An oxygen-adaptive interaction between SNHG12 and occludin maintains blood-brain barrier integrity. Cell Rep. 2022 Apr 12;39(2):110656
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory