2310015K22Rik Gene Detail

Summary

• Symbol
  2310015K22Rik
• Name
  RIKEN cDNA 2310015K22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916815
  NCBI Gene: 69565
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:80202761-80207332 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  263 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916815	lncRNA gene	Chr1:80185706-80207332 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004887	lincRNA gene	Chr1:81029205-81035113 (+)
A/J	MGP_AJ_G0004869	lincRNA gene	Chr1:78174000-78177754 (+)
AKR/J	MGP_AKRJ_G0004847	lincRNA gene	Chr1:80315009-80318759 (+)
BALB/cJ	MGP_BALBcJ_G0004850	lincRNA gene	Chr1:78256202-78260224 (+)
C3H/HeJ	MGP_C3HHeJ_G0004799	lincRNA gene	Chr1:80659984-80664421 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005001	lincRNA gene	Chr1:84183860-84187566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004427	lincRNA gene	Chr1:73492897-73496630 (+)
CAST/EiJ	MGP_CASTEiJ_G0004752	lincRNA gene	Chr1:80026361-80032162 (+)
CBA/J	MGP_CBAJ_G0004792	lincRNA gene	Chr1:86864655-86868395 (+)
DBA/2J	MGP_DBA2J_G0004810	lincRNA gene	Chr1:77481532-77485587 (+)
FVB/NJ	MGP_FVBNJ_G0004829	lincRNA gene	Chr1:76621467-76625221 (+)
LP/J	MGP_LPJ_G0004888	lincRNA gene	Chr1:82179417-82183126 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004814	lincRNA gene	Chr1:90125335-90130325 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005005	lincRNA gene	Chr1:80426167-80431118 (+)
PWK/PhJ	MGP_PWKPhJ_G0004704	lincRNA gene	Chr1:76891538-76895233 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004630	lincRNA gene	Chr1:79702963-79706640 (+)
WSB/EiJ	MGP_WSBEiJ_G0004797	lincRNA gene	Chr1:80206138-80209857 (+)

Homology

• Gene Tree
  2310015K22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 2310015K22Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000101257 (Evidence)
• NCBI Gene
  69565

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101257	Ensembl Gene Model | MGI Sequence Detail	4572	C57BL/6J
transcript	ENSMUST00000191452	Ensembl | MGI Sequence Detail	2284	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2310015K22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7592	Chr1:80202757-80202769 (+)	2 bp