2410003L11Rik Gene Detail

Summary

• Symbol
  2410003L11Rik
• Name
  RIKEN cDNA 2410003L11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916979
  NCBI Gene: 69729
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:97489337-97513719 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  746 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916979	lncRNA gene	Chr11:97489306-97514726 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015202	unclassified non-coding RNA gene	Chr11:100046044-100072075 (+)
A/J	MGP_AJ_G0015176	unclassified non-coding RNA gene	Chr11:95916569-95945705 (+)
AKR/J	MGP_AKRJ_G0015139	unclassified non-coding RNA gene	Chr11:98897685-98922454 (+)
BALB/cJ	MGP_BALBcJ_G0015138	unclassified non-coding RNA gene	Chr11:96405456-96429119 (+)
C3H/HeJ	MGP_C3HHeJ_G0014962	unclassified non-coding RNA gene	Chr11:99012750-99037833 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015595	unclassified non-coding RNA gene	Chr11:103134259-103161064 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013338	unclassified non-coding RNA gene	Chr11:93377107-93400023 (+)
CAST/EiJ	MGP_CASTEiJ_G0014515	unclassified non-coding RNA gene	Chr11:99878879-99904200 (+)
CBA/J	MGP_CBAJ_G0014941	unclassified non-coding RNA gene	Chr11:107388027-107416120 (+)
DBA/2J	MGP_DBA2J_G0015034	unclassified non-coding RNA gene	Chr11:95472026-95495930 (+)
FVB/NJ	MGP_FVBNJ_G0015046	unclassified non-coding RNA gene	Chr11:94964994-94988586 (+)
LP/J	MGP_LPJ_G0015115	unclassified non-coding RNA gene	Chr11:100551744-100577308 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015072	unclassified non-coding RNA gene	Chr11:107238004-107263827 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015634	unclassified non-coding RNA gene	Chr11:99194919-99220815 (+)
PWK/PhJ	MGP_PWKPhJ_G0014307	unclassified non-coding RNA gene	Chr11:96455436-96480067 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014094	unclassified non-coding RNA gene	Chr11:98909797-98933556 (+)
WSB/EiJ	MGP_WSBEiJ_G0014618	unclassified non-coding RNA gene	Chr11:99102233-99129997 (+)

Homology

• Gene Tree
  2410003L11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  94
• Gene trapped
  93
• Targeted
  1
• Genomic Mutations
  1 involving 2410003L11Rik
• Find Mice (IMSR)
  39 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000085860 (Evidence)
• NCBI Gene
  69729

Representative Sequences			Length	Strain/Species
genomic	69729	NCBI Gene Model | MGI Sequence Detail	24383	C57BL/6J
transcript	NR_045496	RefSeq | MGI Sequence Detail	612	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 11
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 2410003L11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104637	Chr11:97489329-97489350 (+)	3 bp