1810019D21Rik Gene Detail

Summary

• Symbol
  1810019D21Rik
• Name
  RIKEN cDNA 1810019D21 gene
• Synonyms
  Esrp2-as

• Feature Type
  lncRNA gene
• IDs
  MGI:1917021
  NCBI Gene: 69771
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr8:106862032-106865355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 53.10 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917021	lncRNA gene	Chr8:106862013-106865358 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015724	unclassified non-coding RNA gene	Chr8:108479060-108482185 (+)
A/J	MGP_AJ_G0015702	unclassified non-coding RNA gene	Chr8:104143811-104146936 (+)
AKR/J	MGP_AKRJ_G0015665	unclassified non-coding RNA gene	Chr8:107152235-107155360 (+)
BALB/cJ	MGP_BALBcJ_G0015663	unclassified non-coding RNA gene	Chr8:104324887-104328012 (+)
C3H/HeJ	MGP_C3HHeJ_G0015485	unclassified non-coding RNA gene	Chr8:107891515-107894640 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016118	unclassified non-coding RNA gene	Chr8:112458448-112461573 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013846	unclassified non-coding RNA gene	Chr8:97274071-97277196 (+)
CAST/EiJ	MGP_CASTEiJ_G0015040	unclassified non-coding RNA gene	Chr8:107418301-107421426 (+)
CBA/J	MGP_CBAJ_G0015466	unclassified non-coding RNA gene	Chr8:116071507-116074632 (+)
DBA/2J	MGP_DBA2J_G0015562	unclassified non-coding RNA gene	Chr8:103480428-103483553 (+)
FVB/NJ	MGP_FVBNJ_G0015568	unclassified non-coding RNA gene	Chr8:102413814-102416939 (+)
LP/J	MGP_LPJ_G0015642	unclassified non-coding RNA gene	Chr8:108690645-108693770 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015590	unclassified non-coding RNA gene	Chr8:119258548-119261673 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016160	unclassified non-coding RNA gene	Chr8:107119625-107122750 (+)
PWK/PhJ	MGP_PWKPhJ_G0014821	unclassified non-coding RNA gene	Chr8:102894203-102897328 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014610	unclassified non-coding RNA gene	Chr8:105814961-105818062 (+)
WSB/EiJ	MGP_WSBEiJ_G0015144	unclassified non-coding RNA gene	Chr8:107806544-107809669 (+)

Homology

• Gene Tree
  1810019D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  3

• Ensembl
  ENSMUSG00000086390 (Evidence)
• NCBI Gene
  69771

Representative Sequences			Length	Strain/Species
genomic	69771	NCBI Gene Model | MGI Sequence Detail	3324	C57BL/6J
transcript	NR_040344	RefSeq | MGI Sequence Detail	1647	C57BL/6

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:289417 Zhang FF, et al., Obesity-induced reduced expression of the lncRNA ROIT impairs insulin transcription by downregulation of Nkx6.1 methylation. Diabetologia. 2020 Apr;63(4):811-824

TSS for 1810019D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79219	Chr8:106862033-106862063 (+)	16 bp
Tssr79220	Chr8:106862067-106862089 (+)	46 bp
Tssr79221	Chr8:106862096-106862112 (+)	72 bp
Tssr79222	Chr8:106862129-106862144 (+)	105 bp
Tssr79223	Chr8:106862173-106862202 (+)	156 bp
Tssr79224	Chr8:106862501-106862521 (+)	479 bp
Tssr79225	Chr8:106862574-106862585 (+)	548 bp
Tssr79226	Chr8:106863690-106863706 (+)	1,666 bp
Tssr79227	Chr8:106865040-106865053 (+)	3,015 bp