2010001K21Rik Gene Detail

Summary

• Symbol
  2010001K21Rik
• Name
  RIKEN cDNA 2010001K21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917079
  NCBI Gene: 69829
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:47133384-47164667 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 24.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917079	lncRNA gene	Chr13:47133384-47164667 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036397	pseudogene	Chr13:45816641-45817159 (+)
A/J	MGP_AJ_G0036383	pseudogene	Chr13:44217237-44217755 (+)
AKR/J	MGP_AKRJ_G0036333	pseudogene	Chr13:45430458-45430980 (+)
BALB/cJ	MGP_BALBcJ_G0036375	pseudogene	Chr13:44423400-44423918 (+)
C3H/HeJ	MGP_C3HHeJ_G0036069	pseudogene	Chr13:45294973-45295491 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036884	pseudogene	Chr13:47197497-47198019 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033999	pseudogene	Chr13:42261879-42262383 (+)
CAST/EiJ	MGP_CASTEiJ_G0035266	pseudogene	Chr13:45235682-45236200 (+)
CBA/J	MGP_CBAJ_G0036041	pseudogene	Chr13:49157118-49157636 (+)
DBA/2J	MGP_DBA2J_G0036214	pseudogene	Chr13:43771594-43772112 (+)
FVB/NJ	MGP_FVBNJ_G0036167	pseudogene	Chr13:43289421-43289939 (+)
LP/J	MGP_LPJ_G0036268	pseudogene	Chr13:46037344-46037862 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036170	pseudogene	Chr13:48982850-48983368 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036992	pseudogene	Chr13:45130698-45131216 (+)
PWK/PhJ	MGP_PWKPhJ_G0034966	pseudogene	Chr13:43904436-43904958 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034783	pseudogene	Chr13:43803269-43803790 (+)
WSB/EiJ	MGP_WSBEiJ_G0035456	pseudogene	Chr13:45438658-45439180 (+)

Homology

• Gene Tree
  2010001K21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 2010001K21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• UniProt
  1

• Ensembl
  ENSMUSG00000051606 (Evidence)
• NCBI Gene
  69829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000051606	Ensembl Gene Model | MGI Sequence Detail	31284	C57BL/6J
transcript	ENSMUST00000224451	Ensembl | MGI Sequence Detail	3192	Not Applicable
polypeptide	Q9CVI8	UniProt | EBI | MGI Sequence Detail	174	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573