2610027K06Rik Gene Detail

Summary

• Symbol
  2610027K06Rik
• Name
  RIKEN cDNA 2610027K06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917159
  NCBI Gene: 69909
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:85682487-85723126 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 51.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  703 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917159	lncRNA gene	Chr11:85682486-85723214 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015193	unclassified non-coding RNA gene	Chr11:87321670-87363394 (-)
A/J	MGP_AJ_G0015167	unclassified non-coding RNA gene	Chr11:83964542-84005035 (-)
AKR/J	MGP_AKRJ_G0015130	unclassified non-coding RNA gene	Chr11:86477113-86521754 (-)
BALB/cJ	MGP_BALBcJ_G0015129	unclassified non-coding RNA gene	Chr11:84347210-84388891 (-)
C3H/HeJ	MGP_C3HHeJ_G0014953	unclassified non-coding RNA gene	Chr11:86502099-86543547 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015586	unclassified non-coding RNA gene	Chr11:89968667-90015265 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013329	unclassified non-coding RNA gene	Chr11:81005304-81046002 (-)
CAST/EiJ	MGP_CASTEiJ_G0014506	unclassified non-coding RNA gene	Chr11:87155387-87201588 (-)
CBA/J	MGP_CBAJ_G0014932	unclassified non-coding RNA gene	Chr11:93769261-93812036 (-)
DBA/2J	MGP_DBA2J_G0015025	unclassified non-coding RNA gene	Chr11:83536933-83578459 (-)
FVB/NJ	MGP_FVBNJ_G0015037	unclassified non-coding RNA gene	Chr11:83035467-83077187 (-)
LP/J	MGP_LPJ_G0015106	unclassified non-coding RNA gene	Chr11:87817212-87860646 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015063	unclassified non-coding RNA gene	Chr11:93888191-93929761 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015625	unclassified non-coding RNA gene	Chr11:86719188-86763830 (-)
PWK/PhJ	MGP_PWKPhJ_G0014298	unclassified non-coding RNA gene	Chr11:84318299-84360450 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014085	unclassified non-coding RNA gene	Chr11:86262385-86306079 (-)
WSB/EiJ	MGP_WSBEiJ_G0014609	unclassified non-coding RNA gene	Chr11:86570719-86615655 (-)

Homology

• Gene Tree
  2610027K06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving 2610027K06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000087013 (Evidence)
• NCBI Gene
  69909

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087013	Ensembl Gene Model | MGI Sequence Detail	40640	C57BL/6J
transcript	ENSMUST00000140673	Ensembl | MGI Sequence Detail	2076	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 2610027K06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109817	Chr11:85723120-85723136 (-)	-2 bp
Tssr109816	Chr11:85695023-85695044 (-)	28,092 bp