2810408I11Rik Gene Detail

Summary

• Symbol
  2810408I11Rik
• Name
  RIKEN cDNA 2810408I11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917191
  NCBI Gene: 69941
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:64719028-64729818 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.74 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  340 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917191	lncRNA gene	Chr1:64719013-64729842 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015101	unclassified non-coding RNA gene	Chr1:64858011-64868701 (-)
A/J	MGP_AJ_G0015074	unclassified non-coding RNA gene	Chr1:62574795-62585475 (-)
AKR/J	MGP_AKRJ_G0015037	unclassified non-coding RNA gene	Chr1:64330508-64341247 (-)
BALB/cJ	MGP_BALBcJ_G0015037	unclassified non-coding RNA gene	Chr1:62670919-62681658 (-)
C3H/HeJ	MGP_C3HHeJ_G0014860	unclassified non-coding RNA gene	Chr1:64602168-64613158 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015494	unclassified non-coding RNA gene	Chr1:67366703-67377482 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013240	unclassified non-coding RNA gene	Chr1:58633203-58644219 (-)
CAST/EiJ	MGP_CASTEiJ_G0014415	unclassified non-coding RNA gene	Chr1:63864858-63875595 (-)
CBA/J	MGP_CBAJ_G0014839	unclassified non-coding RNA gene	Chr1:69557822-69568578 (-)
DBA/2J	MGP_DBA2J_G0014932	unclassified non-coding RNA gene	Chr1:61981101-61991848 (-)
FVB/NJ	MGP_FVBNJ_G0014944	unclassified non-coding RNA gene	Chr1:61257287-61267982 (-)
LP/J	MGP_LPJ_G0015015	unclassified non-coding RNA gene	Chr1:65763085-65773781 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014971	unclassified non-coding RNA gene	Chr1:72422203-72432903 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015532	unclassified non-coding RNA gene	Chr1:64312671-64323366 (-)
PWK/PhJ	MGP_PWKPhJ_G0014207	unclassified non-coding RNA gene	Chr1:61364589-61375561 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013996	unclassified non-coding RNA gene	Chr1:63797686-63809692 (-)
WSB/EiJ	MGP_WSBEiJ_G0014519	unclassified non-coding RNA gene	Chr1:64016997-64027753 (-)

Homology

• Gene Tree
  2810408I11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving 2810408I11Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000087213 (Evidence)
• NCBI Gene
  69941

Representative Sequences			Length	Strain/Species
genomic	69941	NCBI Gene Model | MGI Sequence Detail	10791	C57BL/6J
transcript	NR_038009	RefSeq | MGI Sequence Detail	713	C57BL/6

Molecular
Reagents

• All nucleic 15

  cDNA 15

  
  

  Microarray probesets 4

References

• Summaries
  All 20

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 2810408I11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11929	Chr1:64730195-64730227 (-)	-393 bp
Tssr11928	Chr1:64729809-64729825 (-)	1 bp
Tssr11927	Chr1:64729777-64729797 (-)	31 bp
Tssr11926	Chr1:64729737-64729746 (-)	76 bp