About   Help   FAQ
1700027F09Rik Gene Detail
Summary
  • Symbol
    1700027F09Rik
  • Name
    RIKEN cDNA 1700027F09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917249
    NCBI Gene: 69999
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:64612156-64625285 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    448 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917249
 lncRNA gene Chr5:64612156-64625286 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006654
 lincRNA gene Chr5:64045400-64058504 (-)
A/J MGP_AJ_G0006648
 lincRNA gene Chr5:61664813-61678590 (-)
AKR/J MGP_AKRJ_G0006618
 lincRNA gene Chr5:63588002-63601779 (-)
BALB/cJ MGP_BALBcJ_G0006623
 lincRNA gene Chr5:62338269-62351719 (-)
C3H/HeJ MGP_C3HHeJ_G0006570
 lincRNA gene Chr5:63958956-63972093 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006788
 lincRNA gene Chr5:66693647-66706750 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006048
 lincRNA gene Chr5:57768446-57782822 (-)
CAST/EiJ MGP_CASTEiJ_G0006492
 lincRNA gene Chr5:63028878-63042855 (-)
CBA/J MGP_CBAJ_G0006551
 lincRNA gene Chr5:68849032-68862168 (-)
DBA/2J MGP_DBA2J_G0006571
 lincRNA gene Chr5:61692809-61706338 (-)
FVB/NJ MGP_FVBNJ_G0006595
 lincRNA gene Chr5:60867143-60880479 (-)
LP/J MGP_LPJ_G0006655
 lincRNA gene Chr5:64506647-64519801 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006579
 lincRNA gene Chr5:71759378-71773701 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006790
 lincRNA gene Chr5:63283941-63297058 (-)
PWK/PhJ MGP_PWKPhJ_G0006431
 lincRNA gene Chr5:60662191-60675524 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006339
 lincRNA gene Chr5:62623359-62636729 (-)
WSB/EiJ MGP_WSBEiJ_G0006543
 lincRNA gene Chr5:63494839-63508028 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving 1700027F09Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69999 NCBI Gene Model | MGI Sequence Detail 13130 C57BL/6J ±  kb
transcript NR_040681 RefSeq | MGI Sequence Detail 766 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 25
    Phenotypes 17
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory