Nol7 MGI Mouse Gene Detail - MGI:1917328

Symbol

Nol7
Name

nucleolar protein 7
Synonyms

2210008F15Rik, 5730556I21Rik, NOP27, RARG-1

Feature Type

protein coding gene
IDs

MGI:1917328
NCBI Gene: 70078
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr13:43551852-43556334 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 21.60 cM
Mapping Data

1 experiment

SNPs within 2kb

171 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917328	protein coding gene	Chr13:43551852-43560573 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020499	protein coding gene	Chr13:41994227-41998693 (+)
A/J	MGP_AJ_G0020453	protein coding gene	Chr13:40563170-40567593 (+)
AKR/J	MGP_AKRJ_G0020431	protein coding gene	Chr13:41678494-41687366 (+)
BALB/cJ	MGP_BALBcJ_G0020449	protein coding gene	Chr13:40771892-40776713 (+)
C3H/HeJ	MGP_C3HHeJ_G0020248	protein coding gene	Chr13:41545313-41549719 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020882	protein coding gene	Chr13:43281875-43287479 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018469	protein coding gene	Chr13:38663922-38668167 (+)
CAST/EiJ	MGP_CASTEiJ_G0019763	protein coding gene	Chr13:41383988-41388451 (+)
CBA/J	MGP_CBAJ_G0020209	protein coding gene	Chr13:45120512-45127767 (+)
DBA/2J	MGP_DBA2J_G0020331	protein coding gene	Chr13:40123599-40128027 (+)
FVB/NJ	MGP_FVBNJ_G0020310	protein coding gene	Chr13:39650722-39655306 (+)
LP/J	MGP_LPJ_G0020406	protein coding gene	Chr13:42229331-42239761 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020339	protein coding gene	Chr13:45031153-45035605 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020925	protein coding gene	Chr13:41346802-41352329 (+)
PWK/PhJ	MGP_PWKPhJ_G0019518	protein coding gene	Chr13:40238496-40299185 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019348	protein coding gene	Chr13:39972472-39976947 (+)
WSB/EiJ	MGP_WSBEiJ_G0019825	protein coding gene	Chr13:41656773-41661233 (+)

Human Ortholog

NOL7, nucleolar protein 7

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

NOL7, nucleolar protein 7
Synonyms

C6orf90, dJ223E5.2, PQBP3, RARG-1
Links

HGNC:21040

NCBI Gene ID: 51406

neXtProt AC: NX_Q9UMY1

UniProt: Q9UMY1
Chr Location

6p23; chr6:13615335-13632739 (+) GRCh38

MGI Vertebrate Homology

Nol7 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: NOL7
Gene Tree

Nol7

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

3
Chemically induced (other)

1
Gene trapped

1
Targeted

1
Genomic Mutations

1 involving Nol7
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

9 strains or lines available

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All GO Annotations

13
GO References

5

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

718
Tissues

8
cDNA Data

8
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase nol7

ZFIN nol7

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All Sequences

49
RefSeq

2
UniProt

3
CCDS

CCDS36644.1

Ensembl

ENSMUSG00000063200 (Evidence)
NCBI Gene

70078

			Length	Strain/Species	Flank
genomic	70078	NCBI Gene Model \| MGI Sequence Detail	4483	C57BL/6J	± kb
transcript	NM_023554	RefSeq \| MGI Sequence Detail	1811	C57BL/6
polypeptide	Q9D7Z3	UniProt \| EBI \| MGI Sequence Detail	254	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000011313 nucleolar protein 7

(term hierarchy)
InterPro Domains

IPR039626 Nucleolar protein 7

IPR012579 U3 small nucleolar RNA-associated protein NOL7, C-terminal

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All nucleic 10

cDNA 10

Microarray probesets 5

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MGI:1924449

Summaries

All 31

Developmental Gene Expression 1

Gene Ontology 5

Phenotypes 5
Earliest

J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Nol7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119501	Chr13:43551851-43551878 (+)	13 bp
Tssr119502	Chr13:43552101-43552171 (+)	284 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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