2310044K18Rik Gene Detail

Summary

• Symbol
  2310044K18Rik
• Name
  RIKEN cDNA 2310044K18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917415
  NCBI Gene: 70165
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:83308783-83310171 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 47.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917415	lncRNA gene	Chr7:83308783-83310171 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004477	antisense lncRNA gene	Chr7:85823129-85824517 (+)
A/J	MGP_AJ_G0004457	antisense lncRNA gene	Chr7:83748822-83750210 (+)
AKR/J	MGP_AKRJ_G0004440	antisense lncRNA gene	Chr7:85672745-85674133 (+)
BALB/cJ	MGP_BALBcJ_G0004442	antisense lncRNA gene	Chr7:83425357-83426745 (+)
C3H/HeJ	MGP_C3HHeJ_G0004391	antisense lncRNA gene	Chr7:86223905-86225293 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004593	antisense lncRNA gene	Chr7:89141462-89142850 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004047	antisense lncRNA gene	Chr7:86125966-86127356 (+)
CAST/EiJ	MGP_CASTEiJ_G0004351	antisense lncRNA gene	Chr7:77190901-77192286 (+)
CBA/J	MGP_CBAJ_G0004386	antisense lncRNA gene	Chr7:92130841-92132229 (+)
DBA/2J	MGP_DBA2J_G0004400	antisense lncRNA gene	Chr7:82252930-82254318 (+)
FVB/NJ	MGP_FVBNJ_G0004417	antisense lncRNA gene	Chr7:82211877-82213265 (+)
LP/J	MGP_LPJ_G0004481	antisense lncRNA gene	Chr7:87063775-87065163 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004407	antisense lncRNA gene	Chr7:92158405-92159793 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004591	antisense lncRNA gene	Chr7:85065890-85067278 (+)
PWK/PhJ	MGP_PWKPhJ_G0004304	antisense lncRNA gene	Chr7:75486846-75488234 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004245	antisense lncRNA gene	Chr7:72060376-72061781 (+)
WSB/EiJ	MGP_WSBEiJ_G0004390	antisense lncRNA gene	Chr7:85441195-85442583 (+)

Homology

• Gene Tree
  2310044K18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 2310044K18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085080 (Evidence)
• NCBI Gene
  70165

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085080	Ensembl Gene Model | MGI Sequence Detail	1389	C57BL/6J
transcript	ENSMUST00000125131	Ensembl | MGI Sequence Detail	618	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 2310044K18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67574	Chr7:83308031-83308046 (+)	-744 bp
Tssr67575	Chr7:83309887-83309902 (+)	1,112 bp