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Fam162a Gene Detail
Summary
  • Symbol
    Fam162a
  • Name
    family with sequence similarity 162, member A
  • Synonyms
    2310056P07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917436
    NCBI Gene: 70186
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:35864214-35891931 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 25.43 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    795 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917436
 protein coding gene Chr16:35864131-35891964 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022777
 protein coding gene Chr16:34411443-34441403 (-)
A/J MGP_AJ_G0022742
 protein coding gene Chr16:32736663-32765247 (-)
AKR/J MGP_AKRJ_G0022715
 protein coding gene Chr16:33887694-33916829 (-)
BALB/cJ MGP_BALBcJ_G0022744
 protein coding gene Chr16:32857329-32885388 (-)
C3H/HeJ MGP_C3HHeJ_G0022509
 protein coding gene Chr16:34011512-34039208 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023193
 protein coding gene Chr16:35149323-35178101 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020711
 protein coding gene Chr16:33093708-33118656 (-)
CAST/EiJ MGP_CASTEiJ_G0022037
 protein coding gene Chr16:34240824-34269049 (-)
CBA/J MGP_CBAJ_G0022479
 protein coding gene Chr16:36574001-36605696 (-)
DBA/2J MGP_DBA2J_G0022612
 protein coding gene Chr16:32559642-32586508 (-)
FVB/NJ MGP_FVBNJ_G0022587
 protein coding gene Chr16:32553869-32581651 (-)
LP/J MGP_LPJ_G0022679
 protein coding gene Chr16:34137738-34167644 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022606
 protein coding gene Chr16:35839380-35869765 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023205
 protein coding gene Chr16:33947083-33975380 (-)
PWK/PhJ MGP_PWKPhJ_G0021778
 protein coding gene Chr16:32978679-33005806 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021609
 protein coding gene Chr16:33748074-33775707 (-)
WSB/EiJ MGP_WSBEiJ_G0022081
 protein coding gene Chr16:33871912-33898895 (-)



Homology
more
  • Human Ortholog
    FAM162A, family with sequence similarity 162 member A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM162A, family with sequence similarity 162 member A
  • Synonyms
    C3orf28, E2IG5, HGTD-P
  • Links
    NCBI Gene ID: 26355
    neXtProt AC: NX_Q96A26
    UniProt: Q96A26

  • Chr Location
    3q21.1; chr3:122384161-122412334 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    8
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    4
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 70186 NCBI Gene Model | MGI Sequence Detail 27718 C57BL/6J ±  kb
    transcript NM_027342 RefSeq | MGI Sequence Detail 681 C57BL/6  
    polypeptide Q9D6U8 UniProt | EBI | MGI Sequence Detail 155 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 4

      Microarray probesets 3
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 1
      Gene Ontology 8
      Phenotypes 13
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory