Atad3aos Gene Detail

Summary

• Symbol
  Atad3aos
• Name
  ATPase family, AAA domain containing 3A, opposite strand
• Synonyms
  2610204G22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1917698
  NCBI Gene: 70448
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:155845649-155848017 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 87.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917698	antisense lncRNA gene	Chr4:155845599-155853721 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004022	antisense lncRNA gene	Chr4:160119177-160131495 (+)
A/J	MGP_AJ_G0004003	antisense lncRNA gene	Chr4:153379305-153387222 (+)
AKR/J	MGP_AKRJ_G0003981	antisense lncRNA gene	Chr4:157547125-157555427 (+)
BALB/cJ	MGP_BALBcJ_G0003989	antisense lncRNA gene	Chr4:153852180-153860413 (+)
C3H/HeJ	MGP_C3HHeJ_G0003936	antisense lncRNA gene	Chr4:158094547-158104653 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004138	antisense lncRNA gene	Chr4:165800983-165809060 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003619	antisense lncRNA gene	Chr4:145666190-145673207 (+)
CAST/EiJ	MGP_CASTEiJ_G0003899	antisense lncRNA gene	Chr4:155555156-155565549 (+)
CBA/J	MGP_CBAJ_G0003929	antisense lncRNA gene	Chr4:170810425-170818425 (+)
DBA/2J	MGP_DBA2J_G0003945	antisense lncRNA gene	Chr4:153399844-153408376 (+)
FVB/NJ	MGP_FVBNJ_G0003964	antisense lncRNA gene	Chr4:152645357-152656752 (+)
LP/J	MGP_LPJ_G0004025	antisense lncRNA gene	Chr4:160032772-160050507 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003952	antisense lncRNA gene	Chr4:173618594-173634796 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004132	antisense lncRNA gene	Chr4:158179820-158189649 (+)
PWK/PhJ	MGP_PWKPhJ_G0003853	antisense lncRNA gene	Chr4:149539034-149548803 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003798	antisense lncRNA gene	Chr4:152431152-152438114 (+)
WSB/EiJ	MGP_WSBEiJ_G0003935	antisense lncRNA gene	Chr4:158345828-158358699 (+)

Homology

• Gene Tree
  Atad3aos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054514 (Evidence)
• NCBI Gene
  70448

Representative Sequences			Length	Strain/Species
genomic	70448	NCBI Gene Model | MGI Sequence Detail	2369	C57BL/6J
transcript	NR_027971	RefSeq | MGI Sequence Detail	971	C57BL/6
polypeptide	Q8C5I8	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Atad3aos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40713	Chr4:155845605-155845623 (+)	-35 bp
Tssr40714	Chr4:155845659-155845692 (+)	27 bp
Tssr40715	Chr4:155845792-155845796 (+)	145 bp