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6330403L08Rik Gene Detail
Summary
  • Symbol
    6330403L08Rik
  • Name
    RIKEN cDNA 6330403L08 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917994
    NCBI Gene: 70744
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:138980811-138986332 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 77.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917994
 lncRNA gene Chr5:138980811-138986332 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004208
 antisense lncRNA gene Chr5:143930953-143937313 (+)
A/J MGP_AJ_G0004186
 antisense lncRNA gene Chr5:137841227-137846748 (+)
AKR/J MGP_AKRJ_G0004167
 antisense lncRNA gene Chr5:142138559-142144080 (+)
BALB/cJ MGP_BALBcJ_G0004173
 antisense lncRNA gene Chr5:139082321-139087926 (+)
C3H/HeJ MGP_C3HHeJ_G0004121
 antisense lncRNA gene Chr5:142912627-142919375 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004322
 antisense lncRNA gene Chr5:149251621-149258685 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003796
 antisense lncRNA gene Chr5:131705518-131711038 (+)
CAST/EiJ MGP_CASTEiJ_G0004083
 antisense lncRNA gene Chr5:142311138-142318720 (+)
CBA/J MGP_CBAJ_G0004115
 antisense lncRNA gene Chr5:155390146-155395451 (+)
DBA/2J MGP_DBA2J_G0004131
 antisense lncRNA gene Chr5:137663575-137668876 (+)
FVB/NJ MGP_FVBNJ_G0004147
 antisense lncRNA gene Chr5:136751110-136756733 (+)
LP/J MGP_LPJ_G0004209
 antisense lncRNA gene Chr5:144553888-144560791 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004137
 antisense lncRNA gene Chr5:158102653-158109062 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004319
 antisense lncRNA gene Chr5:141936232-141943900 (+)
PWK/PhJ MGP_PWKPhJ_G0004036
 antisense lncRNA gene Chr5:136649667-136655550 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003980
 antisense lncRNA gene Chr5:139623125-139629831 (+)
WSB/EiJ MGP_WSBEiJ_G0004119
 antisense lncRNA gene Chr5:142700205-142707733 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000075585 Ensembl Gene Model | MGI Sequence Detail 5522 C57BL/6J ±  kb
transcript ENSMUST00000187923 Ensembl | MGI Sequence Detail 5522 Not Applicable  
polypeptide Q3UHK0 UniProt | EBI | MGI Sequence Detail 319 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 5
References
more
  • Summaries
    All 14
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory