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Spata6l Gene Detail
Summary
  • Symbol
    Spata6l
  • Name
    spermatogenesis associated 6 like
  • Synonyms
    4430402I18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918036
    NCBI Gene: 381218
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:28899836-28945289 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 23.57 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1212 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918036
 protein coding gene Chr19:28878668-28945289 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025013
 protein coding gene Chr19:27319915-27396898 (-)
A/J MGP_AJ_G0024990
 protein coding gene Chr19:25936758-26012521 (-)
AKR/J MGP_AKRJ_G0024958
 protein coding gene Chr19:26881908-26958891 (-)
BALB/cJ MGP_BALBcJ_G0024989
 protein coding gene Chr19:25982967-26059274 (-)
C3H/HeJ MGP_C3HHeJ_G0024745
 protein coding gene Chr19:26856763-26934188 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025430
 protein coding gene Chr19:28073628-28151171 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022849
 protein coding gene Chr19:25924900-25996021 (-)
CAST/EiJ MGP_CASTEiJ_G0024215
 protein coding gene Chr19:26679375-26759958 (-)
CBA/J MGP_CBAJ_G0024723
 protein coding gene Chr19:29408294-29489784 (-)
DBA/2J MGP_DBA2J_G0024855
 protein coding gene Chr19:25899021-25974207 (-)
FVB/NJ MGP_FVBNJ_G0024817
 protein coding gene Chr19:25748398-25824128 (-)
LP/J MGP_LPJ_G0024940
 protein coding gene Chr19:27315737-27397217 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024844
 protein coding gene Chr19:29335476-29414924 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025485
 protein coding gene Chr19:26900333-26986302 (-)
PWK/PhJ MGP_PWKPhJ_G0023963
 protein coding gene Chr19:25560324-25637035 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023767
 protein coding gene Chr19:26156065-26237980 (-)
WSB/EiJ MGP_WSBEiJ_G0024282
 protein coding gene Chr19:26936005-27018322 (-)



Homology
more
  • Human Ortholog
    SPATA6L, spermatogenesis associated 6 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATA6L, spermatogenesis associated 6 like
  • Synonyms
    bA6J24.2, C9orf68
  • Links
    NCBI Gene ID: 55064
    neXtProt AC: NX_Q8N4H0
    UniProt: Q8N4H0

  • Chr Location
    9p24.2-p24.1; chr9:4553386-4666674 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 381218 NCBI Gene Model | MGI Sequence Detail 45454 C57BL/6J ±  kb
transcript NM_198651 RefSeq | MGI Sequence Detail 2152 C57BL/6  
polypeptide B2RV46 UniProt | EBI | MGI Sequence Detail 347 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
Other
Accession IDs
less
MGI:2147709, MGI:6456779
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory