Alkbh3os1 Gene Detail

Summary

• Symbol
  Alkbh3os1
• Name
  alkB homolog 3, opposite strand 1
• Synonyms
  4921507L20Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918102
  NCBI Gene: 70852
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:93810379-93813920 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.62 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918102	antisense lncRNA gene	Chr2:93810379-93813920 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015447	unclassified non-coding RNA gene	Chr2:95502152-95505693 (+)
A/J	MGP_AJ_G0015423	unclassified non-coding RNA gene	Chr2:91616938-91620479 (+)
AKR/J	MGP_AKRJ_G0015387	unclassified non-coding RNA gene	Chr2:94194387-94197926 (+)
BALB/cJ	MGP_BALBcJ_G0015386	unclassified non-coding RNA gene	Chr2:91813218-91816759 (+)
C3H/HeJ	MGP_C3HHeJ_G0015209	unclassified non-coding RNA gene	Chr2:94465228-94468767 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015840	unclassified non-coding RNA gene	Chr2:98752229-98755770 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013579	unclassified non-coding RNA gene	Chr2:88097256-88101095 (+)
CAST/EiJ	MGP_CASTEiJ_G0014761	unclassified non-coding RNA gene	Chr2:95068233-95071788 (+)
CBA/J	MGP_CBAJ_G0015190	unclassified non-coding RNA gene	Chr2:102196174-102199715 (+)
DBA/2J	MGP_DBA2J_G0015284	unclassified non-coding RNA gene	Chr2:91224865-91228406 (+)
FVB/NJ	MGP_FVBNJ_G0015291	unclassified non-coding RNA gene	Chr2:90344810-90348349 (+)
LP/J	MGP_LPJ_G0015362	unclassified non-coding RNA gene	Chr2:95692690-95696231 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015315	unclassified non-coding RNA gene	Chr2:105090387-105093928 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015880	unclassified non-coding RNA gene	Chr2:94268062-94271602 (+)
PWK/PhJ	MGP_PWKPhJ_G0014549	unclassified non-coding RNA gene	Chr2:90975736-90979290 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014337	unclassified non-coding RNA gene	Chr2:93830674-93836636 (+)
WSB/EiJ	MGP_WSBEiJ_G0014868	unclassified non-coding RNA gene	Chr2:94889993-94893532 (+)

Homology

• Gene Tree
  Alkbh3os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Alkbh3os1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000027196 (Evidence)
• NCBI Gene
  70852

Representative Sequences			Length	Strain/Species
genomic	70852	NCBI Gene Model | MGI Sequence Detail	3542	C57BL/6J
transcript	NR_045827	RefSeq | MGI Sequence Detail	1550	C57BL/6
polypeptide	Q9D5Y2	UniProt | EBI | MGI Sequence Detail	146	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087