Nckap5los Gene Detail

Summary

• Symbol
  Nckap5los
• Name
  NCK-associated protein 5-like, opposite strand
• Synonyms
  4921518J05Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918162
  NCBI Gene: 102637966
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:99325582-99333194 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918162	antisense lncRNA gene	Chr15:99325582-99344254 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003308	antisense lncRNA gene	Chr15:101270989-101280296 (+)
A/J	MGP_AJ_G0003284	antisense lncRNA gene	Chr15:97237457-97244989 (+)
AKR/J	MGP_AKRJ_G0003267	antisense lncRNA gene	Chr15:100234326-100241938 (+)
BALB/cJ	MGP_BALBcJ_G0003273	antisense lncRNA gene	Chr15:97426612-97434227 (+)
C3H/HeJ	MGP_C3HHeJ_G0003226	antisense lncRNA gene	Chr15:100296538-100304032 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003415	antisense lncRNA gene	Chr15:105041295-105050879 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002937	antisense lncRNA gene	Chr15:93132754-93140306 (+)
CAST/EiJ	MGP_CASTEiJ_G0003192	antisense lncRNA gene	Chr15:101159558-101167146 (+)
CBA/J	MGP_CBAJ_G0003223	antisense lncRNA gene	Chr15:108608223-108618156 (+)
DBA/2J	MGP_DBA2J_G0003228	antisense lncRNA gene	Chr15:96676692-96684396 (+)
FVB/NJ	MGP_FVBNJ_G0003247	antisense lncRNA gene	Chr15:95667195-95674868 (+)
LP/J	MGP_LPJ_G0003301	antisense lncRNA gene	Chr15:101414395-101423821 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003236	antisense lncRNA gene	Chr15:112533530-112541854 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003417	antisense lncRNA gene	Chr15:100327298-100336372 (+)
PWK/PhJ	MGP_PWKPhJ_G0003150	antisense lncRNA gene	Chr15:96812069-96820322 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003096	antisense lncRNA gene	Chr15:100182754-100192880 (+)
WSB/EiJ	MGP_WSBEiJ_G0003226	antisense lncRNA gene	Chr15:100859907-100868696 (+)

Homology

• Gene Tree
  Nckap5los
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Nckap5los
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000089968 (Evidence)
• NCBI Gene
  102637966

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089968	Ensembl Gene Model | MGI Sequence Detail	7613	C57BL/6J
transcript	ENSMUST00000159738	Ensembl | MGI Sequence Detail	1712	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 29

  Diseases 1

  Phenotypes 20
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27